| Id Trinity | TRINITY_DN46046_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_418580 |
| Sequence | TATGCTAGTTGTTGAATCGATCAGGGACCGTTTTTATTAGCTAATTAACCAATAGTTGAAAGTGGCTTTGTTAATACGAGTGTCCTTATTCATGATGTCA GGGGTTTGAACTTTGCTGTGGGTATGGAAAATGCTTTATTAGTAGAGGCAAAACTCATTTCGGTGATCTCTAGATCTCGGAAGGGATTATTAGTCTTTGA AGCTTTTAGGAAGGAGTAGTGGATTTCAAGTATCACCAACCCATCGGCCGTGTACCAAAGGGCTTTGGATGTGGAGTACGCCTTTGAAGAGGACCGCTCT TGATGGAACAGAATACAATCTCTTGCTATTAGATAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGTACCCAGATATTCTCATTAGCTGTC CTATTGTCTAGCATGTTCATTTATAACCAGATGGGTGGTATAGATGAGGCTGCCCTTGATCGTCTTTCTCTTGTCACTCAAATGACAAAGCACATTCGTG TTAGAGCATCTGGGGGAAAGACTTCTGCATCAGAACTTGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTAAGGGACTTCTATTTGGACCTAACAGAAGA TAACAGAAAAATAACACCCCGTGATTATTTGGAACTTGCTTTGAGGCCTGTCCAAGGGAGTGGAAGAGATATAGCTTCTAAAAATGAGATTCGAGATTCC ATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACCCTTGTTCGACCTTTGAATGATGAAAATGATCTACAGCGACTGGAACAGATATCGTTGGACAAGT TTAGACCTGAATTTCGATCTGGCCTTGATTCTTTGACCAAGTTTGTTTTTGAGAGAACACGGCCAAAACAAGTTGGTGCAACTATGATGACAGGCCCAGT ATTGGTAGGTATCACGGAATCTTATCTGAATGCACTCAACCACGGTGCGGTGCCTACAATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCTGAGTGTCAC AGGGCATATGATACTGCTACTGAAGTGTATATGTCTTCTTTTGATCGCTCAAAGCCACCCGAGGAAGCTGCTTTGAGGGAAGCACATGAAGAAGCAGTTC AAAAGTCGATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTTCAGCCAGGAAGAAATATGAGGGGCTTCTTCAGAAATTCTTCAAAAAGGCTTTTGA GGATTATAAGCGGAATGCTTTCATGGAGGCAGACCTACAATGCTCAAATGCCATACATTCTATGGAGAAGAGGCTGAGGGCAGCTTGCAATGCTTCTGAT GCAAGGATTGACAATGTTGCAAAGGTTCTTGATGCTCTTTTAACTGAATATGAAAAGTCAATTCAAGGTCCTGGGAAGTGGCAGAAACTTGCTGTCTTCT TACAACAAAGTTTTGAAGGCCCAGTGCTCGACCTTACCAAGAGGCTGATAGATAAAGTTGAATCAGACAAGAATGCTCTTGCTTTACAGTATCGGATGAT TGAAGACAAAATGTCCCTACTCAACAAGCGGTTGGAAGCTACTGAAAATGATAAATCTGAGTACATTAAACGATACGAGGATGCTGTTAATGATAAGAAA AAACTAACTGATGAATACATGAATCGCATTACTGATCTGCAGGCCAACCGTCGTTCATTGGAAGAGAGATATTCCAGTGTGTTAAAAACTTTAGATTCTA CTAAGCATGAATCTGTGGATTGGAAAAGAAAATATGAACAGGTTTTATCGAGGCATAAAGCTGAGGAAGATCAGGCTAGTTCTGAAATTGCAGCCCTCAA GTCCCGTGGTGCTGCTGCTGAAGCAAGGTTATCAGCAGCTAGGGAACAAGCACAGTCTGCTCAAGAGGAGGCTGAAGAGTGGAAGCGGAAGTATGATATT GCTGTTAGAGAAGCGAAGGCTGCTTTAGAGAAGGCAGCTGTTGTACAGGAGCGCACAAACAAGCAGACTCAGTTGAGGGAAGATGCTTTAAGAGAGGAAT TCTCCGTTACCTTGGCTGAAAAAGACGATGAAATCAAAGAGAAGACTGCCAGAATTGAGCATGCTGAGAAGTGTTTAGCAACTTTGAAGTTAGAATTGAA GGCTGCCGAGTCAAAGATAAGGAGTTATGAAGCCGAAATATCATCACTAAGGATTGAAATTAAAGAGTTGAGCGAGAAGTTGAAAACTGAAAATGCTAAG GCCCAGTCATATGAGAGGGATGCACTTGTGTTTCAGCAGGAGAAAAGCCTCCTAGAGCAGAAGTATCAATCTGAATTCAAGAGATTTGAGGAGCTTCAAG AAAGGTGTAAAAATGCTGAAAAAGAAGCTGCAAGGGCTACTGAGGTGGCTGATAAAGCTCGGGTTGAAGCAGTCATGGCTCAAAAGGAGAAAAGTGAGAT GCAGACACTTGCAATGGAGAGACTGACGCATATTGAGAGAGCTGAAAGGAAAATTGAAAGCTTGGAGAGGGAGAAGGATAATTTGGAAGATGAATTGCAG AGAGTAAGGTATTCAGAGAATGATGCACTTACCACTGTCGCGAAACTAGAAGAAAAGGTGCAACAGAGAGAGAAGGATTTGGATGCACTTTTGGATAAAG ATAAAACGCACAGGCGAAATAATGCTCAGATTCTTGAAAAGCTTTTGGAAACAGAACGTCAAGCACATACACAGGCAAATAACCGAGCCGAGTCTCTCTC TCTACAGCTACAGTCTGCACAGGCCAAAATTGACTCTCTCCATCAGGAGTTGACCAAGTTTCGACTGAATGAAACAGTATTGGACGGTAAGCTAAAAACT GCTTCCCGTGGTAAACGTGTTAGGGTAGATGATGAAATAGGTGCAGAATCTTTTCAGGACATAGATTTGATGAACCCTAGAATTGTAAGGACAAATAAGA GATCTAAGAGTACAATCAGTCCTCATCAGGACACACACCCAGAAGATGGTGGTTCCACCTATATAGGTGCTGAGGATGATCAGAGTCAGCATACAAACCA GGACTATAAAAAATTTACAGTGCAGAAGCTTAAACAAGAGCTGACCAAGCATAACTTCGGCGATCAGCTACTTCAGTTGAGGAATGCCAAGAAGGAAGAT ATCCTTGCCCTTTACGAGAAATGTGGTCTTCCTAAGTTATAGTTGATTATGAACAGAACTAGTATAGGTATGATGCATGTAATCACCTGTGTGGGTTTGT GTAATTTTCATCCATGCCATGGTTGCTTAAATTTAGACTAGAGATGCTGTGTGAACTGTGGAATTAACATATTTGTTTCAGCGCTTTTACATATTGGGTG TGTTCACTTCAGTTTGCTAGTAAAGATAATCGGATACGCCATAAAATATTTTGATGGCTGGACTTTTATTTGTTTAGTGCTGAGTGTGTTGTATTTTTGT ATTTAACATTTGTTAGCTTGAGCACTTCATGTGCACTTTAGAAGGTGCCAGGTACCCTCCAAAACCATATGTATGATCTGAACTTCAGATTGTATAATTT AAAGCAAAAGATTGATGTTACATGCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_141937; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_418580
| Blastp | Guanylate-binding protein 1 from Mus with 35.38% of identity |
|---|---|
| Blastx | Guanylate-binding protein 3 from Homo with 33.56% of identity |
| Eggnog | Guanylate binding protein(ENOG410XR6Z) |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000678) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416980.1) |
| Pfam | Guanylate-binding protein, N-terminal domain (PF02263.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |