Ll_transcript_417333

• Id Trinity: TRINITY_DN46058_c2_g1_i5
• Name Transcript: Ll_transcript_417333
• Sequence: TTTTGACACTGTCACACTGTTCTTATCTCTCTTCAGTTGCTACTACTATAATGCAAGTTGTGTCTTCCACATCGTGTTTTCTGAAACTAGGTGTAAAAGC TTCATGGGACACACAACAAAGACCCTCTTACAACCCAAATGCTCCAAGAAAAGAGCTTAATAAGAAGCTTACAAAAACACAATCCATTCCTTCTCCTCCT CCTTTGATTTCTACCAAGAAAGAACAATACATTTCTGATCTTTTGAAACGCAACACTGCTCCAAATTCTTCAACTATAAATGGAAAAGAAAAACAAAAAC AAGAAGAAGAAGAAGAAGATGATGATGGTGGTGATAATGGAGTATATTTGGGATATGAAAGATGGTTGCCAACTCCACCTAAAGTTGTTAAGCCTCGTTC TGTGTTTAATGCTGCAACTTTAGCTTATATTGGTGACTGCATCTATGAGCTATATGCCCGTCGACACTTTTTATTCCCTCCCCTAGGTATCGAAGAATAC AATGTTCGTGTAACGGCGGTTGTGCGTTGTGAAGCTCAAGTATGACTTCTTCCCTTGTTTCTTTATTTTAACGTCATGTGAAGCAATGAAATTAGATAAA TAGCATGCTAGTTCTTGACTGTGCTGGTAAATATTTAATTTTCGGTATGTTTTCCCCCCTTCCCAACTGAAGAAGTAGAAAGAAACCCTTTATTGCCTTT AGTCAGATTCAGTTAAGTCTATATTTTCTTTTTCTCAACTTTGGCACTGTTCATGTTTTCTCCATCCCAAATCTATTCATATAGCTTTACATGCTTATGA GATCTGTTTCACATGATATTAATCAGTATCTATTTCTCACTAGTGGAAAAAGATGTAATTCGAGATGGAAAAGGGAGAAATTCACTAAGGGTCCATTTGG ATGTTGGAATCGGAAATAAATCGTAGAGTTTGATTTCAATTTTATCAAAATTTGAACTGGATATGAATTTTGATTTTAATGTTTGGGGCAAATAAAGAAT TGAGGTATATGGTTGTAATCGATTTGGAGGATGTCGTCGATGGTGGTGGTAGGAGGGGTATCATTGATGATGGTAATTATTGAACACTGCTAGCGGTGGT AGTCCGAGAGTGTCGTCAGCAACTATCATCAGTGGACACTGTTAGTGACCATGGTCAATGGTTGCTGTCAGTTATTGAAAGACACTGCAACAAAATGGTT GGTGGACAACATCGACGATGGTGATTCAAGGGATTCCTTGGTGACGATGCTTACAGTATGCCACTGGCAATGATGGTCAGTGTATGGTAATTCGGCGATG GTGGTTTGTGGACGTCATGAGTGATGGTGGCAGGATGCTGTTGCAAGTAACAATGGTCATATGGCATCCCAATGACCACCAACTCGGCCGACATCAACAG CAATTGTTATTGAAGTATGCAACAAAGATAATAAATAATATTTATAACTTACATATTTTCCATTTTCATGATATTGGAATTTGGAATCTGGAATTCTAAT TCTAATTTTTATTCGCCTAATTCCATGCGCCTAACGTCACATAAGTGTATTACTGTATTTCATGTTGAGTTTTAATAACAATAATATGCTTAGTTCTTTT CCCTCTTGTATGCAAACTTTAGAAGCTTTTCCCCAGGAATGAATTTGTTGAGAGGGTTTTTTCATAGTTTGAATCCCATATTCTTGCTATTAATTGTGAC CATCTTTATATCTTCGCTATTAACTATTGTTCTACTTTTCTTCCGATTCCTAAAGTAAAACGATATGAATTTTGGTTTCAGTTTGTGATGTCCTGTTGAT TTTGTTTATTCATGTTTTCTGTGTTCCAGGATGCATTGCTCCTGAAACTTCTCAACAGTGACTTCTTATCAGATCAAGAGAAGTAAGAATTTGTTACTTT CAGGGTTTCAGCTCTCTCTCTCTCTCTCACACACACACACTTTCTATTTTTGTTATTATATTACGAAGC
• Tissue: pods
• Gene name: LI_gene_142006;
• Additional information: details;

Expression of Ll_transcript_417333

FPKM

• PAB: 0.1
• PNAB: 0
• PS1: 0.3
• PS2: 0
• PS3: 0.5
• PW1: 0.2
• PW2: 0.2
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_417333

• Blastp: Mini-ribonuclease 3 from Thermosynechococcus with 41.54% of identity
• Blastx: -
• Eggnog: Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)(COG1939)
• Kegg: Link to kegg annotations (tlr0428)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447387.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;