Id Trinity | TRINITY_DN46085_c0_g1_i11 |
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Name Transcript | Ll_transcript_418528 |
Sequence | CGAAAATGGGAAAGGGGTAAATTTTGCATCTAGGGTTTATGCTTTATATTCAACACCATCATCAAATTCTCTTCCACAACAATTCATAAAAAAAAATTGA AAATTTCTGGTTCTTCACTGCATCTATGGCTTCCAGGGACAAGGAACAAGCTCCTCGGAACCATCACCACCATCTCTTGAGCAGCCTCGTCGTCCGCCCC GAAGTCACCTCCGTCGCCGATACCGGCGCTGATCGCGGCGGCGATTTCGAGCCCGGAGAATTCCGCCGTGATCATCGTTCCCCTTATTCCCGCTCTGATC GATATTCGGGTGATGCTGGTCTGTTCCCTCTCTTATTACTCATCTATGTCCTTAATCAGAGTTAGGTTTTTAATTTTTACGTTTTGGAATTTATATGAAG AAAGTGGTTCTGTTCATTAAGATTTGTTTGTTTCTGGTTTTGTTTTGTTGTTAATTTATTTAGTGCCTTGATGTTACAATGTGTGTTCTTTTTTAATTTC GTAATTAGGGTTAGGTTTCCAGTTTTCCGTTTTGGAACTTAGACGAAGAAGCTGGTTCGGTTCATTATAATTTGTTTCGCTGTTGTTTTTGAATTTTGGG CTTCGAGTTCTGATTTTTCCCTGTTTTTTAATCGAAAACTTTGTTGAATATCTTTTTGTGGTCTTCGAGGGAGTAAAAGTAAGGACATAAATATGATAAG TTTTACATTTGATGGCACTAGTATACAATAATTTAGCTATTGTAAATATTTTGTTGATAACAACAAAAGATGAGAACAATTGAAAAGCATTGTGTTGTTC ATAGTTACCTTAAAGACCCACATTTGACATAATTTTTGAAGTCTGCAATGGTGTAAGCATGATTGTCAAGTAGACTGTAGCAGCTAAATTTGCTTTTGAA GATTTATTTGGGTCTGAGTGACACGAAAACTGCCATTTTTTCTCTTGACATTTTTAGTGTCACTCTCTATAGAATCTATACAGAGATAGGTTTTGTTACA CGTTGTGTATTCATTATGTGCATGCCAAGCATATGGATCTCCTATCGATTATAGTATGCCAACAATGAATAAATTTTGCATTTGTGTGTTACAGCTCTGA TGATGAAGGCCTGTTGCTGTGAATTCAGTTTTGGATCATGATCTGGGGTTGTTTTTTAGTTAAAAGGGTTAATAAGTGTGTTGGATGATGGAAATAGTCC ATTCTGCGTGAGAACTTGTGAGGTTTTGTACCATGAAATCTGTTCTATGGGTTCTCATTTTGCTGAGTCATGGTCATATGTTTGATTTGGATCATTTGTG AAGACAGTGTCAAGTTTAATGGAATATGGGATAGAATCACACGGTACCACGTGACTATCACTGTGGTCACATGATTTGTCGAGGACTACGACTGACCACT GCTATTTGTTTTTGGGGAATAAACTTACACTATAACCAATGTTTGTCTGCTATATTTGGGTTCCATGGGGTATATTTGGGTTCCATGGGATATATTTAGT TTCCACCGCAAGAAGTTCTTCGTAGCTGGATGAAATGCTTCCATTACTGAAACTGATCTGACATTATGGAATGGTAACGTTTATTGATGATAAGCTTCAT ATCGTTATCACTTATCTATGGTCATTTGAAATCCAGCTACACGTGTATGGTTTTCCTTTGGAATCTTAATATTTTTTGTAGCTGGTGATTGTCATTTTAG TTTCTTTGGTATTTTCTTGTTTGGGTGGTTAATAAGAGATGATTAAGCTGGTTGTTTATTTACAACATGGAAAGATGATTCTCAGATTAGTAATTCCATG TGGAAGTTTAGGGACTTTGTTATCATGTGATTGTGTCTGCCAAATCCATAATAGCTTTCATATTGATGCATTATGTGGGGGTAACGACATGGTACAGAGA AGGGGTGCATATCTGCTAAAATTTGAGGGAGTGCACTTTGCCATGTCCAATTTCATTCTCCAACTGCTTTGGTGTTACTTAGGGGTGGTATTGACATTGT TCTACACAACTTCAACAGGGTTTATCTGCATGGGTCATTGTTGTGAAAATTTGTGAATTATGTTGCTTTGAATCTACCTTTGGGTGGCGCAGCATACTGG GGAGATGGTTGCAAAAACAGTCGAAGTCTCAAAGAGGTGGTTGATGGTTGCAAGATACCAAACTTTGGGATTCTTCACTCTGTTGTGGCGTTTGTTGGTG GTTATTTCTTTGTGGTGTACTTTCTGTTCTTATGCTCCTGAATATGATCACTTTCTAAAGGGTGAAATGACATTGGTGTATTGTTTGTCATGTCGGATTA GGTTTTTCTATGGGTGTTAGCTCATACTTTTGTCGAGGTTTTGAACTTTGTTCTTATTTTATCCTGTAGTGCATAGGTCCAAAATTTGGATTTGATATTT CTGATGCTTAGGTTAAATGATATTTGTATGCTTAACTATATCATGGTCTGACATTGCATTCAGAGATTGATAGAATTGAGATCAAGGATATAAAAGAGGT AGCTTATGTGTCACGGAAAGCCCTGCCCATAGAACCTGTTTGCTTTTTGGTAATATGGATCAGGTGTTTGTAAAGTGACATTGAAGGTGCTATCAATAAA CTTCCTGCACTTTTAATTTACATATCCTTGAGGAGGAGAAGCCCTGTGTGGTAGTAACCTTCCCTTTGAAATGTCAGGGTTATATGGCAGTTGCATGATC ACAAGTTTTTGGATTCTACAGTAGATTGCAATGCTAAATTTTGCCTCAAACTCTGTAAGTTGCTTATTTTCAGATTTCATTGTCTTTGTTTTCCCAGGGT ATAGAATTCGCGCAGGTTCTGCATCTCCGGTACACCGTAGAGATGCAAATCACCGCTTTGGTTCTGATTATAATCACTTATCACAAAGCCGTGGATATGG CGGCGGGAGAGATCCTGGTAGATATAGAGATCCTTCACCTCCTTATTTTCGAGGAAAAGTAGGTGGCAGACCAGTTGGTAGAGCTTTTGACAGGCCTGGC TTTGTTCCTGGGCTAGCTAGAGGAGAAGGGAACAGTAGAAACAACCCTAATGTTCGTCCAAGGGAGGGTGATTGGATTTGTCCTGATATCCGGTGTGGTA ATCTTAACTTTGCAAGGCGTGACTACTGTAACAAGTGTAATAGGTCTCGACCTGCACCCGCCGAGAGTCCCCGGAGGGCATATCCTGGTCCTCCACCACT TCGTAGTTCTCCTAGACGCTTTCCTGGTTCCCCAGAAAGGACTGTGATTGGCTATAGATCTCCTCCTCGTGGGTTGGCAAGGGATGGACCTAGAGAGTAC GGATCTGCTGCTCTGCCACCCCTCAGGCATGAAGGCAGGTTCACAGATCCCCATCTGCATAAAGACAGGATCGATTACCTAGAAGATGCTTACAGGGGGA GGAACAAGTTTGATAGGCCACCACCCCCACTAGAGTGGGAAAGTAGAGACCGTGGAAGAAATGGTTTCTCCAATGAGCGGAAAGCATTTGAGAGGAGGCC ACTGTCTCCCCATGCACCACTGTTGCCGTCACTTCCTCCACACCATGGTGGTCGGTGGGCTCAGGATGTTAGAGAGAGGAGCCGCTCTCCAATAAGAGGC AGCCCGCCACCAAAAGATTATCGCCGTGATATGTTTGTGAATCGAGGAAGAGGTGATAGACGTGCCTTGGGACGTGACAGAACTGGAGGAATGTATTAGC TGCTGGACTTGCTGCAATTTGTGATGTAAACTGTAGCTCTATTAAATGTTGAAGCTTGTTAAGTTAAAGAGATTAGTTCTTGAATCTCAGGATTAGGGTA ACGTACTGAAAAACCATTGTTCTGAATTGCTTGACATATTTAGGCTTTTGTTCTAATCTGTATACTGTTTGAAAAAGGAGAATACACAATTTTTTGACTC CAACTTCTGGATCTCCACTCTATTTTTTAAATGATATTTGGTTGCCTGTTTATAGATTATATTCTTGAGAATGTGATACATGAGAGAATCACTTTCTAAC AAAGGTGAGAATTAAGTTTTCATTTCAA BLAST |
Tissue | pods |
Gene name | LI_gene_142188; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_418528
Blastp | Zinc finger Ran-binding domain-containing protein 2 from Sus with 56.41% of identity |
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Blastx | TATA-binding protein-associated factor 2N from Homo with 64.29% of identity |
Eggnog | Zinc finger, RAN-binding domain containing 2(ENOG4111QXA) |
Kegg | Link to kegg annotations (733651) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019448374.1) |
Pfam | Zn-finger in Ran binding protein and others (PF00641.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |