Ll_transcript_418117

• Id Trinity: TRINITY_DN46095_c1_g1_i2
• Name Transcript: Ll_transcript_418117
• Sequence: GGGAAAGGAAAAAGAAAAAACATCACCCAAAATGATATCTTAACCAGTGACTAACCATGGTTGAAAATAGAAACCCCCGAATTTGTGCGTGTGGGTGTCA CTGTTAGTGCTTTCTGCATTGGTTCTCTGCAAAACTCTGCAAATCTTTCGCCGCCTTCTTCGTCCATTTCGGTCCTTCCCCACTTCTCTCAAATTTTGGG TCTTTTTACCTTTCTCCAAAGTTCCTTTTTTTCATACTAACTTCCACTGTTTTGTTGCAAATCATCATTCCCACTCAAACACTGTTATAGCATTTTAATT AGCGAAAACTTTGTCGGTCAAAGCAACCCAACTCAGGTTTTCTCGAAATTTTGTACCTTTTTGAATGCCCAGTTAAGGAAATTACCATCTTTGAGTAAAA ATTGGAGTTACACGAGCTTTCCCTTGATCTCAGCCAAAAATCAGTGTCACTATTGTCGATGGATATTCAACTTGTTGTGTGTGTATGTGCCGACTTAAAT CTTATGCTGGTCAGAAAATAATATATAAATATAAAAATAAGATCTAATCTTCAACCACCTTTACTTTATTACTTGTTTTATTTGGATTCCAAAGGGGTTT CCCAATAACAGGGGTATGCTGGTGGAAGTAACAGTAAGGAGCTAAAAAGTGCACAAGTTTGAAGAGTTTTGGAGATTTTTTGTTCCATTAATTGGTTGAT TCATCAACCATCATGCCTCTTTATGAGTTATACCGGCTTTCTAGAGAGAAGCTTGATAAAGAGGTTAGCAACACATGTGCAGCTGAACAATCTCAATCTT CCTTGCCTGAGAATGATTTCTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCAACACAGGGTCAGTCCAGAAAGAGCCCTTCTTCTGGCAAGAGTTTGCC ATCTCACTGTGTACCGTCTCATAGTCCGAAAGGCCGAGATAAAGATGAAGGAGGATATGCTATGAATACAAGGATGGGAAAGTTTGTGGATTTTGATTCT GGATTGAATGAAATCTCAATGCCAGTCCCATCACATGAAGTGGATTTGAGTCAAGATGGAGATATGATGCATTGGTTGGATTACACAATGGATGGATCTT TGCAAAATGACTATAGTTCTGATTTCTTACATGAACTATCCGGTGTCACAGAAAATGACCTCCCGAAATCAAATAATTTTGCCCTTGTGGATAGAAGAAG CAATGGTACTAATCAGGTATTTAGGGACTCTCGTAAAAGTTCTGCAAGTTATGTTCCTGGTTTAGAACAAGGGAATGTTTGTAAAGGTTCTTCAACCGAA GAAGTTGACACTTCTGGGCCTAAAGCTAGTATCAATCAGCTATACCCGCCATCATCACATCAATGTCAAACACCATTTGCATCTGTTAGATCCAAAGTAT CAGATATAACTGAGAATAATATTAATAATGCTACTCAAAATGCACCTCATCATGGCGAAATAACTCAGATTGCCTCTTCCTCTAGTGATTTTTGTAGCTT AAAGATGCAGAAGCAGGAAACAGCTATTCCTAATAATGGTTCCACCGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGGTATTATGAGAACTAATCTT CAGAATGTTGGCTTCAAGTCTGATTTATCTTCAGGAAAATCAGACAGTCGGGGAAATAAGAATAAAGGTGTAGCTACAACTAGCAGCTACCGTTCTGAAT CAATAAGAGTTGATTCAAGTGGTGATTGTTCAAAGGAACCAACCATGCACTGCCAGCAGGTTGTGGAACAATCTAAGGCTGATTTGAAACAGTTGGAGCC AAAATCTCTTGAACAGGAGGCTGCCGTAGTTTCTAAACAGTTGGACCCAGTTTGCAAAGAGAGTTCTATTAAGGTTGACAAAACTTCCATTCAAATTCTT GCTGAAACTGGCTCTAAAAAACAAACTGCTTTTGAAAAAAGTATGGAGCCAGCAGTAGCCTCCTCCTCCGTTTGTTCTGGCAATGGTGCAGACAGAGTTT CAGATGAGCCAAATCAAAATTTGAAGCGGAAGAGTAGAGACACTGAGGGCTCTGAGAGCCATAGTGAAGATGCTGAGGAAGAATCTGTGGGTCTTAAAAA GGCGGCTGCTGGACGAGGAGGTACAGGTATTAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTTTCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAG ATGCGTGCATTACAAGAACTCATACCAAATTGCAACAAGGTTGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAG TTCAAATGATGTCAATGGGAGCTGGTTTATATATGCATCCAATGATGATACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACC TATGGGTGTTGGCATGCAAATGGGGATGGGTATGGGTTATGGGATGGGTATGCCTGACATGAATGGTGGTTCTTCTAGATTCCCAATGATTCACATGCCC CAAATGCAAGGAAATCATTTACCTGTTGCACATGTGTCTGGACTCAACGCTTTACATGGGATGGCAAGATCAAATCCTCAAGGGTTTGGGCTTCCAGTTC AGGGTCAGGGACTTCCCATGCCGATACCACGTACTCCTGTTTTTCCTTTTTCAGTAGGGCCTTTTATGAACTCATCCACTTCGGTACAACATGCCGGTGG AACAGTAGCAGGACTTGCTGAAACTGGGAACTCAGCTTCTTGCTTGAAAGACCCAATGCCAAATGTGGACCAACAAGTTAAGCAAAGTAATGACTCAACA AGTCAGATGATGCTTCAACCTAACCAGTGTGAAGCAGCAACCGTTGGATTTGAACAGTCAGCTTTGGTGCAAAATAGTGACCATGCCTCTGATATTAATG ACAGTGGAGCTGTTAATGCAAAGAACATAGCCTCATGATTGGTTATGATTGATATTCGGCATTGACTGTGGCTAGTAGAAGAATCCATTTTTCTGAAAAG TGAGTTCAAAATCTCTTGTTTCTCATTTTGCAAGCTGAATGTAGATTATCAGAGGATATTTCAGATTATGTCGACTTGTCACAACAAACATTAGAATCTT AAATTCCAGACTTACAATACTACACAAATTTTGGTATCTTGGGAGACATCACTCATTTGTATATCCACTTAGCTAGCTGTTCAATCAACTGTCATAAATT TTTTATATACTACATATATGTATTCAAATGTTTGATTCAGATCTTTCATAGTGATTCTTTCGATTAATGCAATAATAGTTGTTTCTTTGCAATCTAGTTT CCTCTCAATGTCGTGACAAATACTTGAACACTAAGATGCAGATGAATGTTGAAGTAT
• Tissue: pods
• Gene name: LI_gene_142218;
• Additional information: details;

Expression of Ll_transcript_418117

FPKM

• PAB: 3
• PNAB: 2.8
• PS1: 2.6
• PS2: 3.7
• PS3: 3.5
• PW1: 11.6
• PW2: 13.4
• PW3: 7.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_418117

• Blastp: Transcription factor PIF3 from Arabidopsis with 34.41% of identity
• Blastx: Transcription factor PIF3 from Arabidopsis with 58.75% of identity
• Eggnog: Transcription factor(ENOG4111SYS)
• Kegg: Link to kegg annotations (AT1G09530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441239.1)
• Pfam: Helix-loop-helix DNA-binding domain (PF00010.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;