| Id Trinity | TRINITY_DN46095_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_418122 |
| Sequence | GGGAAAGGAAAAAGAAAAAACATCACCCAAAATGATATCTTAACCAGTGACTAACCATGGTTGAAAATAGAAACCCCCGAATTTGTGCGTGTGGGTGTCA CTGTTAGTGCTTTCTGCATTGGTTCTCTGCAAAACTCTGCAAATCTTTCGCCGCCTTCTTCGTCCATTTCGGTCCTTCCCCACTTCTCTCAAATTTTGGG TCTTTTTACCTTTCTCCAAAGTTCCTTTTTTTCATACTAACTTCCACTGTTTTGTTGCAAATCATCATTCCCACTCAAACACTGTTATAGCATTTTAATT AGCGAAAACTTTGTCGGTCAAAGCAACCCAACTCAGGTTTTCTCGAAATTTTGTACCTTTTTGAATGCCCAGTTAAGGAAATTACCATCTTTGAGTAAAA ATTGGAGTTACACGAGCTTTCCCTTGATCTCAGCCAAAAATCAGTGTCACTATTGTCGATGGATATTCAACTTGTTGTGTGTGTATGTGCCGACTTAAAT CTTATGCTGGTCAGAAAATAATATATAAATATAAAAATAAGATCTAATCTTCAACCACCTTTACTTTATTACTTGTTTTATTTGGATTCCAAAGGGGTTT CCCAATAACAGGGGTATGCTGGTGGAAGTAACAGTAAGGAGCTAAAAAGTGCACAAGTTTGAAGAGTTTTGGAGATTTTTTGTTCCATTAATTGGTTGAT TCATCAACCATCATGCCTCTTTATGAGTTATACCGGCTTTCTAGAGAGAAGCTTGATAAAGAGGTTAGCAACACATGTGCAGCTGAACAATCTCAATCTT CCTTGCCTGAGAATGATTTCTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCAACACAGGGTCAGTCCAGAAAGAGCCCTTCTTCTGGCAAGAGTTTGCC ATCTCACTGTGTACCGTCTCATAGTCCGAAAGGCCGAGATAAAGATGAAGGAGGATATGCTATGAATACAAGGATGGGAAAGTTTGTGGATTTTGATTCT GGATTGAATGAAATCTCAATGCCAGTCCCATCACATGAAGTGGATTTGAGTCAAGATGGAGATATGATGCATTGGTTGGATTACACAATGGATGGATCTT TGCAAAATGACTATAGTTCTGATTTCTTACATGAACTATCCGGTGTCACAGAAAATGACCTCCCGAAATCAAATAATTTTGCCCTTGTGGATAGAAGAAG CAATGGTACTAATCAGGTATTTAGGGACTCTCGTAAAAGTTCTGCAAGTTATGTTCCTGGTTTAGAACAAGGGAATGTTTGTAAAGGTTCTTCAACCGAA GAAGTTGACACTTCTGGGCCTAAAGCTAGTATCAATCAGCTATACCCGCCATCATCACATCAATGTCAAACACCATTTGCATCTGTTAGATCCAAAGTAT CAGATATAACTGAGAATAATATTAATAATGCTACTCAAAATGCACCTCATCATGGCGAAATAACTCAGATTGCCTCTTCCTCTAGTGATTTTTGTAGCTT AAAGATGCAGAAGCAGGAAACAGCTATTCCTAATAATGGTTCCACCGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGGTATTATGAGAACTAATCTT CAGAATGTTGGCTTCAAGTCTGATTTATCTTCAGGAAAATCAGACAGTCGGGGAAATAAGAATAAAGGTGTAGCTACAACTAGCAGCTACCGTTCTGAAT CAATAAGAGTTGATTCAAGTGGTGATTGTTCAAAGGAACCAACCATGCACTGCCAGCAGGTTGTGGAACAATCTAAGGCTGATTTGAAACAGTTGGAGCC AAAATCTCTTGAACAGGAGGCTGCCGTAGTTTCTAAACAGTTGGACCCAGTTTGCAAAGAGAGTTCTATTAAGGTTGACAAAACTTCCATTCAAATTCTT GCTGAAACTGGCTCTAAAAAACAAACTGCTTTTGAAAAAAGTATGGAGCCAGCAGTAGCCTCCTCCTCCGTTTGTTCTGGCAATGGTGCAGACAGAGTTT CAGATGAGCCAAATCAAAATTTGAAGCGGAAGAGTAGAGACACTGAGGGCTCTGAGAGCCATAGTGAAGATGCTGAGGAAGAATCTGTGGGTCTTAAAAA GGCGGCTGCTGGACGAGGAGGTACAGGTATTAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTTTCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAG ATGCGTGCATTACAAGAACTCATACCAAATTGCAACAAGGTTGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAG TTCAAATGATGTCAATGGGAGCTGGTTTATATATGCATCCAATGATGATACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACC TATGGGTGTTGGCATGCAAATGGGGATGGGTATGGGTTATGGGATGGGTATGCCTGACATGAATGGTGGTTCTTCTAGATTCCCAATGATTCACATGCCC CAAATGCAAGGAAATCATTTACCTGTTGCACATGTGTCTGGACTCAACGCTTTACATGGGATGGCAAGATCAAATCCTCAAGGGTTTGGGCTTCCAGTTC AGGGTCAGGGACTTCCCATGCCGATACCACGTACTCCTGTTTTTCCTTTTTCAGTAGGGCCTTTTATGAACTCATCCACTTCGGTACAACATGCCGGTGG AACAGTAGCAGGACTTGCTGAAACTGGGAACTCAGCTTCTTGCTTGAAAGACCCAATGCCAAATGTGGACCAACAAGTTAAGCAAAGTAATGACTCAACA AGTCAGATGATGCTTCAACCTAACCAGGTTTGTTTACTGACAGATTTCTTGAATTACTGTTTTGTTACAACAATTGTAGAGGGATTTACCTTGATATGGT ATTCAGTTGTATATGATAACTGCAAATATCGTAATATAATGCGGAATGGTCTGCTTCATCTTATAACTCATTTGCCCTACAGAGTTAGAAAGTGAAAGTC TATTGCTCTCCATTTCCGCCCCTGTGGAATGTGTTATCGGTAATTCTATTTCTAGGCTACCTAAAATAAACATTCTGAGTTACTTAATTATCCTAGTCAT TTAACTAATATTACCTCTAAAATTACCATGGAGTGGTTATTTCATCTTTTATCATAAATGACGGTAGTGCTAACAAGTTCCCTAAGGGCGTTGATTAAGG AGCACAAAAAAGGAAATTAGCATTGGAAAAATAAGTCCAACACTTATTGATGTGTTAAAACATACAAAATTTACTTTCTCTCTTGCTTAAACAGTGCCTT TCGGGGGCACTTGTTAACACCCCCCCATAAATATTAGTCCACCCTGGTCCCATCACCAATATTCAGATTAGTTTGTTTCCATGGTCACTTTTTACAAGTA ATACGCCTGATATTTCTGTTCTCCTTTTTTATATGATAGTGTGAAGCAGCAACCGTTGGATTTGAACAGTCAGCTTTGGTGCAAAATAGTGACCATGCCT CTGATATTAATGACAGTGGAGCTGTTAATGCAAAGAACATAGCCTCATGATTGGTACACACACAACCATATTCAATATGATGTTTTACATTGATATTTTA AGCTAAGGAGTTCATAATGGAACGCCTTACTGTTCAGTTATACGTGCAGGTTATGATTGATATTCGGCATTGACTGTGGCTAGTAGAAGAATCCATTTTT CTGAAAAGTGAGTTCAAAATCTCTTGTTTCTCATTTTGCAAGCTGAATGTAGATTATCAGAGGATATTTCAGATTATGTCGACTTGTCACAACAAACATT AGAATCTTAAATTCCAGACTTACAATACTACACAAATTTTGGTATCTTGGGAGACATCACTCATTTGTATATCCACTTAGCTAGCTGTTCAATCAACTGT CATAAATTTTTTATATACTACATATATGTATTCAAATGTTTGATTCAGATCTTTCATAGTGATTCTTTCGATTAATGCAATAATAGTTGTTTCTTTGCAA TCTAGTTTCCTCTCAATGTCGTGACAAATACTTGAACACTAAGATGCAGATGAATGTTGAAGTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_142218; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_418122
| Blastp | Transcription factor PIF3 from Arabidopsis with 34.11% of identity |
|---|---|
| Blastx | Transcription factor PIF3 from Arabidopsis with 33.98% of identity |
| Eggnog | Transcription factor(ENOG4111SYS) |
| Kegg | Link to kegg annotations (AT1G09530) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441239.1) |
| Pfam | Helix-loop-helix DNA-binding domain (PF00010.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |