| Id Trinity | TRINITY_DN46101_c0_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_281789 |
| Sequence | TGAAAAACCAAAACAAAGAAGACACGACACATATGTAAATGAATGAATGAAAAAAGAGGTTTTGATTTTTGAAGAACACAAATACAATGTGTTTGTAACC TTTGTGAGGAATCGCAAGTGTTTATGTTTAAGAATGGAAGTAGAAGATGAGTGGGATTTGAGCACAGAAGAACTTGATTCTCTCGAAAGAGACGCTTTTC AAAAGATTGCTCAATTACGCAATTCCCAATCTCAACCCCAACCTTCTCCTTCTCTTTCTTCTCAACCCCTTTCTACACCTTCTCCTACATACCCTAACCC TTTCCCAGATTCACGTCCACAAAAGGTTGAGAATTTGTCTCAAGGTGCTAGAGCATTACCCACGTCATCGAAATCAAAAGGGTCAAGCCAAGGTGTACCT TCAAAAGAATTGCCGAAGCTATCGGTCAAATTTTTTCTTCATTCAAGTGGAAGTGTTGCAGCAAAATTTCAATATGAGCAGGTAGTAGTTGCTGCTTTTC GCAAAATCTCTAGAGCTTCATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGATACTTGGAGAAATATCTGG ATACAATGTTCAGGTGGAGAACATAGATCCCTTAGCACACCGGGCCATTACTGCTGCATCTGCTGTTCCAGATCTTCGAGATCGATATGACAAGATCCCT AGCTATGTCGAAACAAAGCTTTTGCCGTTTCAGCGAGATGGTGTCAGGTTTATATTGCAGCATGGAGGACGTGCTCTTTTAGCAGATGAAATGGGATTAG GGAAAACTTTGCAGGCTATTGCTGTAGCTGCATGCATTCAAGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCTTTACGCTTGCAATGGGCTTCTAT GATTCAACAATGGCTGAATATTCCTTCATCCGATATACTTGTTGTCTTGTCTCAAAGTGGTGGATCAAATAGAGGAGGGTTCAATATAGTATCTTCAAGT GGTAAAAGCAGAATTCACCTGACTGGACTGTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAAAATATGCTTATAGCATCAGACTTTAAGGTTG TGATTGCAGATGAATCACACTTTCTAAAAAATGCTCAGGCAAAAAGGACTGCTGCTTCTCTTCCGGTTATAAAGAAAGCTAAATATGCAATTTTGCTTAG TGGAACTCCTGCTTTATCCCGACCAATTGAATTATTCAAGCAGTTGGAAGCCTTGTATCCTGATGTATACAAGAATGTTCATGAATATGGTAACCGATAT TGCAAGGGTGGAGTCTTTGGTGTTTTTCAAGGTGCAAGTAACCATGATGAATTGCACAATTTGATGAAGGCAACAGTAATGATTCGTAGGCTTAAAAAGG ATGTTCTTTCTGAACTTCCTGTGAAGCGCAGACAACAAGTTTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATTCTTTATTTCGTGAGCAAAT TTTATCCAACATAGTGATCAGAGCTTCGTGCATCGAGCCGTCTTCTTCTTACATTGATGATAAGTTTCTTACCAAAATTATGTCATTTCACTTTGAAGTT GTAATATTTGTAGATTGAATTTGTATATTTAGTTGGAGGTGGTAAAGGCCAACCGATAAAGTTTTCCTTCAAAAATTGCAAAAAAAGTGTTGATTTTGTT TTGCAGTTGGAGATGGTTAAAGCCAAAATTAAGGAATCTAAATCAAAAGATGAGGCTGAATCACTTAAGTTCACTCAAAAGAATCTTATTAACAAGATAT ATACTGATTCTGCAGAGGCCAAGATTCCATCTGTTCTTGATTATGTTGGTACTGTGATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCC AATGATAGACTCGATACATGAGTTTCTTCTTAAGAAAAAAGTTGGTTGCATACGGATTGATGGGGGTACACCTGCTGCATCAAGGCAACAATTGGTGACA GAGTTCCAGGAAAAGGATGCCATAAAGGCAGCAGTGTTATCTATTAAAGCAGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACAGTCATCTTTGCAG AACTGTCCTGGACTCCAGGTGACCTTATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTACTCTTAACTTTTGGTGTTGTAATAGAAAGGTAAAA AGAGAACCAAAATACCAATGTAGTTCAAAAATCAGCAATACCAATACAAGAGTACTTGCACAATTGCATTAAGAAATTATGATAATTATATCAGTAATGA AAATATCTGAGGTTAGTAAGGGTGAGCCTCGGTGTAACAGTGAGGATGCTGTCTTGTGACCTGGAGTTTACTGGTTCAAATTTTGGAAACAGTCTCCTCT TGCTGAGATAAGGTTTTGTACATCTATCATTCACTGACACCACTAGGTGCGAGCGTCATGCATCGGGCCACTCCTTTTATTTGATCTTTTTAATAGAAAA CGACAACCTATGCTTCAATGATTCTTTGACTTACTAGTTCTATTTTAGGTGTCTTCTGTAAATATATACTACTTGCTGGCCAATGACACAGTTGATGACA TCATCTGGTAAATTGTGTTTTCTGCAGCCCTTTTAATCTTTATGGTTGGTATTGCTTACATGTATTGGATGTATTGATAATCTTCTAATTTTTAACTTAC TAGGGATGTAGTGCAAAGCAAACTGGAAAACTTGGGACAGATGTTAGATGGGCATGAGAACACCTTAGAGGTCTCAGCAAATCAACCAGAGAATTGCTCT GCAAAGCAAAAAACTCTTGACGAGTTTGTTAGAAGATGTGATGGCAGGGATGAGTTGGAACATCAGTCCAACCCCAAACGTTCTCGGCCCTGACCCCGGA CTTCTTCAAAATGGTAAGTAAGTTCATTCCTGGCACTGCACGTACAAGCCTAACTGCTGTCGGTGTAATTGGGATTGGGTCTTAAAATGTTGTGACTATG TTGATCTCTACTTGGAGAACATGTATGCTGCAGTTATATGTTTTATTGTCCTTTGGGATTTTAAATGCAGGTGCTCAAATGGGAAAACAATTGCATGTTG GCACTGAATTTTTGATGCCACGAGAAGGGCTTTTACAAGTGGATGTAGCTAAAAGAAATGGAACACTAAACTATGCTGCTGGTGCTGAGGTGATCTGGCT TCTGAAATATGTATTAGGTGAAAATAGTGATGAAGTCAACCAATTAGATTTTCGGTTTTATCTACTAGTTGTCCCCTATAGTTGTTTTTGGGGCTTGTAT TTTGTATAGATGACATTATCATATGTATGACACTTGCAAATTGCTTCACTCAATACAATGTTTTAGTATTGCTGTCAGAAATTGAGTCCGAGTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_142262; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281789
| Blastp | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 from Homo with 40.38% of identity |
|---|---|
| Blastx | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 from Homo with 40.38% of identity |
| Eggnog | helicase(COG0553) |
| Kegg | Link to kegg annotations (50485) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419023.1) |
| Pfam | SNF2 family N-terminal domain (PF00176.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |