| Id Trinity | TRINITY_DN46101_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_281779 |
| Sequence | TTTTCATACCGTCATTCCTTGCCTTTTCTCTTTTCCCCCTTCTCCCGTAGGGAAAAAAGCATCCAATATTTATTATGTGGGTGTACCATATACACAAGTG TTGCAAGTGCAATTTTTCCTGGCTTTTGCAGGCTATTGCTGTAGCTGCATGCATTCAAGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCTTTACGC TTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCCGATATACTTGTTGTCTTGTCTCAAAGTGGTGGATCAAATAGAGGAGGGTTCA ATATAGTATCTTCAAGTGGTAAAAGCAGAATTCACCTGACTGGACTGTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAAAATATGCTTATAGC ATCAGACTTTAAGGTTGTGATTGCAGATGAATCACACTTTCTAAAAAATGCTCAGGCAAAAAGGACTGCTGCTTCTCTTCCGGTTATAAAGAAAGCTAAA TATGCAATTTTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAATTATTCAAGCAGTTGGAAGCCTTGTATCCTGATGTATACAAGAATGTTCATG AATATGGTAACCGATATTGCAAGGGTGGAGTCTTTGGTGTTTTTCAAGGTGCAAGTAACCATGATGAATTGCACAATTTGATGAAGGCAACAGTAATGAT TCGTAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTGAAGCGCAGACAACAAGTTTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATTCT TTATTTCGTGAGTTGGAGATGGTTAAAGCCAAAATTAAGGAATCTAAATCAAAAGATGAGGCTGAATCACTTAAGTTCACTCAAAAGAATCTTATTAACA AGATATATACTGATTCTGCAGAGGCCAAGATTCCATCTGTTCTTGATTATGTTGGTACTGTGATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCA TCAGCCAATGATAGACTCGATACATGAGTTTCTTCTTAAGAAAAAAGTTGGTTGCATACGGATTGATGGGGGTACACCTGCTGCATCAAGGCAACAATTG GTGACAGAGTTCCAGGAAAAGGATGCCATAAAGGCAGCAGTGTTATCTATTAAAGCAGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACAGTCATCT TTGCAGAACTGTCCTGGACTCCAGGTGACCTTATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTACTCTTAACTTTTGGTGTTGTAATAGAAAG GTAAAAAGAGAACCAAAATACCAATGTAGTTCAAAAATCAGCAATACCAATACAAGAGTACTTGCACAATTGCATTAAGAAATTATGATAATTATATCAG TAATGAAAATATCTGAGGTTAGTAAGGGTGAGCCTCGGTGTAACAGTGAGGATGCTGTCTTGTGACCTGGAGTTTACTGGTTCAAATTTTGGAAACAGTC TCCTCTTGCTGAGATAAGGTTTTGTACATCTATCATTCACTGACACCACTAGGTGCGAGCGTCATGCATCGGGCCACTCCTTTTATTTGATCTTTTTAAT AGAAAACGACAACCTATGCTTCAATGATTCTTTGACTTACTAGTTCTATTTTAGGTGTCTTCTGTAAATATATACTACTTGCTGGCCAATGACACAGTTG ATGACATCATCTGGTAAATTGTGTTTTCTGCAGCCCTTTTAATCTTTATGGTTGGTATTGCTTACATGTATTGGATGTATTGATAATCTTCTAATTTTTA ACTTACTAGGGATGTAGTGCAAAGCAAACTGGAAAACTTGGGACAGATGTTAGATGGGCATGAGAACACCTTAGAGGTCTCAGCAAATCAACCAGAGAAT TGCTCTGCAAAGCAAAAAACTCTTGACGAGTTTGTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_142262; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281779
| Blastp | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 from Homo with 44.56% of identity |
|---|---|
| Blastx | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 from Homo with 44.56% of identity |
| Eggnog | helicase(COG0553) |
| Kegg | Link to kegg annotations (50485) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419020.1) |
| Pfam | SNF2 family N-terminal domain (PF00176.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |