Id Trinity | TRINITY_DN46107_c1_g1_i12 |
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Name Transcript | Ll_transcript_281212 |
Sequence | TTCTAATCCCTTCTAAATCGATTTTTTATTTTTTAGTATATGGAAATTATAAGCTAAAATCTAAAAGCTAAAAGCTATTATTCGTTTGACTATAAATATA AAAAGTGGTTAGTGTTTTATATATTATTTCCTCTGCGGAAATTCTTTTTGAATTTGAAAAATATGGTTAATTTTAAAATTTGAGTTTCAGATTATTTATT TAGGTTTTGATTTTAATTGAAGTCAAAAACTAATAAATTTTAAAATATTGAGAGCTGATATTTATTCAAATCAATTTAGTTGAAGTCACAAACTAATGCG AAATGACATTTTAAACTGTTTTGTGGGGTTTAAGATTGAAGTTTTCTATTTGTTATATATATACTTGAATTGTAGGAAAAACTATACTCAGTGAAGGGTT TAAATCAAAATAAAATTATGATCGATTTTGTTTTGAAGTTATGGAGTTAATAAAAGATCCTATGCATTTGTTGTTGAATAATCATGGGTTTGCCGGTTCC TCGTGGTGACTGAAATTGCTTCTGAAAATAAGTGATATTAATCAAGGCTGGAATCTCAAAACGGCTCTTCTATCCAAAATCTTTTCAATGAGATTTGGGA AAGGAACACAAAAAGAGTTAGAGAATTGGCATTATTTTTGCCATAGGCCTTTGGTTTGGAAGCATTTCTTTATCACTGCCTGGATTTGGTGACAATGATT ATTGTATTACAGATGTGTAGGTGTGAGTATTTCTCTTATAAGATGTGAGGCTCTTTTACATTCTCTTTTTTAGAAAAGTATACATGATTTTGTAGAAATA TTTTGATCTATATATTATGTAGGTATTCAACAGTATATTGCATCCATGTTTTCTCTGCATTTTATTTTTATGTAGTGTTTATGTAAATATGCATTATGTA GAACATAAATTTGTATTAGAACATAAAGTGTGTTTCTAAAGAAAGCCATATTTTGGTATGGTAATGTTTTTTTGCATTTCATGTATGTTTACGTGATTTT CAATTTCCTGAAATGTCAAACTTACGAGTTTGTCAGACATGATGTTGCTGTTAATATTGAAGTTTTTGGATAAATCACATATTTTTGCGTGTTTATAGAA CTGAATAGTTCCTTTTTTGCAGACTGTTCCTTTATAATTCTTGTATGTCTGCTAAGACTGTAAAATATTAGACATTTATTTTGTTTTATTTTATATTTAA CTCTGTTATTTACATGTTCTTGGTGGTTTTTTTAATTTTCTGCATGTTTTATTTATAAAGAAAATGACGTGGAAGATTTTTGATATTATTATACACTAAA TGATGTTTTATCACTGCTCTAAACTACCTATTGTTTTTTTTGCTACACAAATGTAAATTCAGCTATATATGTGTTCTAAATGGTCACCTTTTGTTGTTTA TGTTTTCTTCATCAATAGGGCTAAAGTAAGCCCCTTTTAAGCTCTTGACTTCTGTGTTAGCAATAATTTTTGTTCTGTTTCCTTTATTAATCTATTCCGT CTTATTTTTTTCTGACTAATTTGAACTTAATTTTTTTATAATCTAACCTATTTGCAATTTAAATCGACCGCCATTTTATTTTCGAGTGGAAGCTGTGTGG TGCTTTGAATCTGTGAAATGATCTGTTATTTCTAATTTACAATGCTTATCCATGTAATTTACATGTTGGTTTAGTGGTATAAAACTTGTTTATTTATATT AACGTGCTGTTCTGTATAACCTTACCATCTTCTAAAATTTGAATATACAGTGAAGGCTTTCCCAAAAGATGACCAAAGTAAACCATGCAGATTGACTTCC TTTTTGGGGTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAGAAGCCTGGATCTAGTAAGTGTTTTTTGTTGACTTTGTCAAGGATGGATGTAG AAGCTGTCATGGAGTAATATTTTGTTGATGTTATGTAGCCAAAATATTATCTCTTTGTTTGTGTAAAACATGGGCTAGGCATTTGTGTATCTGGTGCCAT ATAAAGTTGTGAATGGTGTGCCTGTTTTTCAATTCTGACATTATCTTTTTAAATATACATCAGTTTTTGTTTGAAACGATGAGTACATGTTTTGGGCGAA GTCATTAGTAAGATATTGTGAACTTTTTGCTTTAATGTATGTATTATTGGAGTGTTAATGGTCCTTCAGCTTTTAGAATATAGTGTCTCTATGTTATGTA ATGTTAGTGATTGTGATTCATAGTTGTTTTGCTATGTTCCTGATAACATTTTATCTATTACAGAGCTTCATAAGAAAGAGACATGTGAGGCTGTGACTAT CATTGAGACACCTCCTTTGGTTGTGGTTGGAGTGGTGGGATATGTCAAGACACCTCGTGGCCTCCGCACTCTGAATACTGTTTGGGCACAACATCTAAGC GAAGAAGTCAAGAGACGTTTCTACAAGAACTGGTCCAAATCTAAGAAGACGGCTTTCACCAAGTATTCAAAAAGTTATGAAACCGAGGAAGGAAAGAAAG GCATTGAATCTCAACTTGAGAAATTGAAGAAATATGCAACTGTCATTCGTGTTCTTGCTCATACTCAGGTAATGCAGTGTTCTCATTGGATATTGTTTAT GACTGACTTCTGCATCTTGTACAATCTAGTCAGTAGGCTGGTGAATGATCTCTCTGTCATTAATGCTAGATTTTGGTTTTTGGTGAGGTAGATTAGTTCA TTATCATATGTAGTTGTTAAATCTATCAGGTGATCAGTGCCACAGCTCTTATCATATGTAGTTGTAAGTAATAAGTAGTAGTCCTTCTTTGTTTACTGTA GATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAGGCACATCTGATGGAGATCCAAGTTAATGGTGGTACAATAGCTCAGAAGGTGGATTATGCATACAAC TTCTTTGAGAAGCAAATCCCAGTGAATGCAGTTTTCCAAAAAGACGAGATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAA CACGTTGGGGTGTCACTCGCCTACCTCGTAAAACACATCGGGGTCTGAGGAAGGTTGCTTGCATTGGTGCTTGGCATCCGGCTCGTGTTTCTTTCACAGT GGCCAGGGCTGGACAGAATGGATATCATCACCGAACTGAGCTGAACAAAAAGGTTTACAAAGTTGGCAAATCCGGAGAAGAATCACATACAGCCATCACT GAATTTGACAGGTATGTTTGTTATCGGCTATCATTCTAGCTTGTCCTATAATTCTGGCTTCATGATTATAACATTTTAGTACCCTTTTGCTAACACAACA GGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTGTGGTGAATCATGATTATCTTATGGTGAAGGGAGGCTGTGTTGGACCCAAAAA GAGAGTTGTAACTCTTCGTCAGTCACTACTGAAGCAAACTTCTCGTTTGGCTCTTGAAGAGATCAAACTCAAGTTTGTAGATACCTCATCCAAGTTTGGA CATGGCAGGTTCCAAACCACTGAGGAGAAACAGAAGTTTTATGGCCGTGTGAAGGCTTAATTTCTGGATTATTTTTCTTTTTGCTGTGTTTTGGAATAGC TATACCGTTTATTGGATATTTTTGCATATTTTGCTTTCAATTTTGTCGCATAGTTTTGTATTTTCTTAATAAGATACAATAGGTACTGTTACTGAATTGA AAAACCAGTGAATCAAACCCAGTTTTAAATAGAGTATACAATAACAATAGTTTTTG BLAST |
Tissue | pods |
Gene name | LI_gene_142290; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281212
Blastp | 60S ribosomal protein L3 from Oryza sativa with 90.24% of identity |
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Blastx | 60S ribosomal protein L3 from Oryza sativa with 78.15% of identity |
Eggnog | One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity)(COG0087) |
Kegg | Link to kegg annotations (4351604) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019434008.1) |
Pfam | Ribosomal protein L3 (PF00297.21) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |