| Id Trinity | TRINITY_DN46107_c1_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_281206 |
| Sequence | TTCTAATCCCTTCTAAATCGATTTTTTATTTTTTAGTATATGGAAATTATAAGCTAAAATCTAAAAGCTAAAAGCTATTATTCGTTTGACTATAAATATA AAAAGTGGTTAGTGTTTTATATATTATTTCCTCTGCGGAAATTCTTTTTGAATTTGAAAAATATGGTTAATTTTAAAATTTGAGTTTCAGATTATTTATT TAGGTTTTGATTTTAATTGAAGTCAAAAACTAATAAATTTTAAAATATTGAGAGCTGATATTTATTCAAATCAATTTAGTTGAAGTCACAAACTAATGCG AAATGACATTTTAAACTGTTTTGTGGGGTTTAAGATTGAAGTTTTCTATTTGTTATATATATACTTGAATTGTAGGAAAAACTATACTCAGTGAAGGGTT TAAATCAAAATAAAATTATGATCGATTTTGTTTTGAAGTTATGGAGTTAATAAAAGATCCTATGCATTTGTTGTTGAATAATCATGGGTTTGCCGGTTCC TCGTGGTGACTGAAATTGCTTCTGAAAATAAGTGATATTAATCAAGGCTGGAATCTCAAAACGGCTCTTCTATCCAAAATCTTTTCAATGAGATTTGGGA AAGGAACACAAAAAGAGTTAGAGAATTGGCATTATTTTTGCCATAGGCCTTTGGTTTGGAAGCATTTCTTTATCACTGCCTGGATTTGGTGACAATGATT ATTGTATTACAGATGTGTAGGTGTGAGTATTTCTCTTATAAGATGTGAGGCTCTTTTACATTCTCTTTTTTAGAAAAGTATACATGATTTTGTAGAAATA TTTTGATCTATATATTATGTAGGTATTCAACAGTATATTGCATCCATGTTTTCTCTGCATTTTATTTTTATGTAGTGTTTATGTAAATATGCATTATGTA GAACATAAATTTGTATTAGAACATAAAGTGTGTTTCTAAAGAAAGCCATATTTTGGTATGGTAATGTTTTTTTGCATTTCATGTATGTTTACGTGATTTT CAATTTCCTGAAATGTCAAACTTACGAGTTTGTCAGACATGATGTTGCTGTTAATATTGAAGTTTTTGGATAAATCACATATTTTTGCGTGTTTATAGAA CTGAATAGTTCCTTTTTTGCAGACTGTTCCTTTATAATTCTTGTATGTCTGCTAAGACTGTAAAATATTAGACATTTATTTTGTTTTATTTTATATTTAA CTCTGTTATTTACATGTTCTTGGTGGTTTTTTTAATTTTCTGCATGTTTTATTTATAAAGAAAATGACGTGGAAGATTTTTGATATTATTATACACTAAA TGATGTTTTATCACTGCTCTAAACTACCTATTGTTTTTTTTGCTACACAAATGTAAATTCAGCTATATATGTGTTCTAAATGGTCACCTTTTGTTGTTTA TGTTTTCTTCATCAATAGGGCTAAAGTAAGCCCCTTTTAAGCTCTTGACTTCTGTGTTAGCAATAATTTTTGTTCTGTTTCCTTTATTAATCTATTCCGT CTTATTTTTTTCTGACTAATTTGAACTTAATTTTTTTATAATCTAACCTATTTGCAATTTAAATCGACCGCCATTTTATTTTCGAGTGGAAGCTGTGTGG TGCTTTGAATCTGTGAAATGATCTGTTATTTCTAATTTACAATGCTTATCCATGTAATTTACATGTTGGTTTAGTGGTATAAAACTTGTTTATTTATATT AACGTGCTGTTCTGTATAACCTTACCATCTTCTAAAATTTGAATATACAGTGAAGGCTTTCCCAAAAGATGACCAAAGTAAACCATGCAGATTGACTTCC TTTTTGGGGTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAGAAGCCTGGATCTAGTAAGTGTTTTTTGTTGACTTTGTCAAGGATGGATGTAG AAGCTGTCATGGAGTAATATTTTGTTGATGTTATGTAGCCAAAATATTATCTCTTTGTTTGTGTAAAACATGGGCTAGGCATTTGTGTATCTGGTGCCAT ATAAAGTTGTGAATGGTGTGCCTGTTTTTCAATTCTGACATTATCTTTTTAAATATACATCAGTTTTTGTTTGAAACGATGAGTACATGTTTTGGGCGAA GTCATTAGTAAGATATTGTGAACTTTTTGCTTTAATGTATGTATTATTGGAGTGTTAATGGTCCTTCAGCTTTTAGAATATAGTGTCTCTATGTTATGTA ATGTTAGTGATTGTGATTCATAGTTGTTTTGCTATGTTCCTGATAACATTTTATCTATTACAGAGCTTCATAAGAAAGAGACATGTGAGGCTGTGACTAT CATTGAGACACCTCCTTTGGTTGTGGTTGGAGTGGTGGGATATGTCAAGACACCTCGTGGCCTCCGCACTCTGAATACTGTTTGGGCACAACATCTAAGC GAAGAAGTCAAGAGACGTTTCTACAAGAACTGGTCCAAATCTAAGAAGACGGCTTTCACCAAGTATTCAAAAAGTTATGAAACCGAGGAAGGAAAGAAAG GCATTGAATCTCAACTTGAGAAATTGAAGAAATATGCAACTGTCATTCGTGTTCTTGCTCATACTCAGGTAATGCAGTGTTCTCATTGGATATTGTTTAT GACTGACTTCTGCATCTTGTACAATCTAGTCAGTAGGCTGGTGAATGATCTCTCTGTCATTAATGCTAGATTTTGGTTTTTGGTGAGGTAGATTAGTTCA TTATCATATGTAGTTGTTAAATCTATCAGGTGATCAGTGCCACAGCTCTTATCATATGTAGTTGTAAGTAATAAGTAGTAGTCCTTCTTTGTTTACTGTA GATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAGGCACATCTGATGGAGATCCAAGTTAATGGTGGTACAATAGCTCAGAAGGTGGATTATGCATACAAC TTCTTTGAGAAGCAAATCCCAGTGAATGCAGTTTTCCAAAAAGACGAGATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAA CACGTTGGGGTGTCACTCGCCTACCTCGTAAAACACATCGGGGTCTGAGGAAGGTTGCTTGCATTGGTGCTTGGCATCCGGCTCGTGTTTCTTTCACAGT GGCCAGGGCTGGACAGAATGGATATCATCACCGAACTGAGCTGAACAAAAAGGTTTACAAAGTTGGCAAATCCGGAGAAGAATCACATACAGCCATCACT GAATTTGACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTGTGGTGAATCATGATTATCTTATGGTGAAGGGAGGCTGTGTTG GACCCAAAAAGAGAGTTGTAACTCTTCGTCAGTCACTACTGAAGCAAACTTCTCGTTTGGCTCTTGAAGAGATCAAACTCAAGTTTGTAGATACCTCATC CAAGTTTGGACATGGCAGGTTCCAAACCACTGAGGAGAAACAGAAGTTTTATGGCCGTGTGAAGGCTTAATTTCTGGATTATTTTTCTTTTTGCTGTGTT TTGGAATAGCTATACCGTTTATTGGATATTTTTGCATATTTTGCTTTCAATTTTGTCGCATAGTTTTGTATTTTCTTAATAAGATACAATAGGTACTGTT ACTGAATTGAAAAACCAGTGAATCAAACCCAGTTTTAAATAGAGTATACAATAACAATAGTTTTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_142290; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281206
| Blastp | 60S ribosomal protein L3 from Oryza sativa with 89.42% of identity |
|---|---|
| Blastx | 60S ribosomal protein L3 from Oryza sativa with 89.42% of identity |
| Eggnog | One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity)(COG0087) |
| Kegg | Link to kegg annotations (4351604) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434008.1) |
| Pfam | Ribosomal protein L3 (PF00297.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |