| Id Trinity | TRINITY_DN46154_c5_g3_i7 |
|---|---|
| Name Transcript | Ll_transcript_283164 |
| Sequence | CTTTATTGTTTGATGAAGCAGCCACATTTTTTCACATTCCCGATTTAGGATTTCACCTACTCATTGAGTTTGGATGAATTTAATGACCAAAATGGAAAGA ACACTATTTTGAATTCAAAATTATCAAACGGTGACTACCAAAACTTTTTGACGCCATAGTTGTAACATTTTTCCCTCTCAATTTCCCATTTGATATATTC TCTTACACTTCCCTCACCCTTCTTCCTTCAATTCAATTCAATTCATCGCCATGATCCATTCTTTTCCCAATTCCGAATCCGATTCCACTTTTTCCCCAAA CAAGAGACAGAGAAGGATCACTTCTGCTATCATCGATCTTAAACCCTTAGATTTGCCTCTCTTTTCGTCATCCACAACCAACGACGTCGTTTCAACTCAC CACTCTATCATCCTCAACTCCGACCACCCCTACACGATCGGACGCTCACCCCGCCACTGCGATTTCGTGTTCTCCGATCGCCACGTCAGCAAGCGGCACT GTCAGCTTCTCCTCGACGCTTCCCTTAACAAACTCTACATCCTAAACGGTGTTTTGTTACCCCAAAACGGCTCTGCTGAATGCGTCGTTTATGAGTTCAG GAAAAGGGTCATGTTGCCGTTTCATCGTGGCAGTTATGGTCATGGTGTTGCGTTTCGAGAATCTTCCAATGGGGTTTTTGTGAACGGCGTTGAAGTAAGA AAGGGAATGGCTTCAGAGGTGTCAATTGGTGATAAGGTTTCGCTGGTTTGTGGAAATGAAGATGGTTCGTGTTGTGTTCAGGATCGGAAAATTGGGTTTG TTGTTCAAAGAATTGATTTTGATTTTAAATTGAATGATTTAACATTACCGGGGCATTCCCAAGGGAAACGGAACAAAAGGGTTTTTGCTGTATCTAGATA TGAGAGAATTGTTGGGAGGACAAATTTTCTTTTGGATAGGTGCCGTGAGATTTTGCTTAGTGATGATCCCATATCTCGTGTTATGCGTGCTGTTTCGGAA ATAGAAACTGGTAGATTGCGTGTAGACGGTGAAGTGCAGTCTAAGTTACTTAAGAACTCTTCAAATAAAGATAAACATGATGGTGTAGTTCAGTGTAGTT CGGCCATACTTTGTCAAAATAAAGTGATGGTTTTGGAGCGCGAATGTGACCTTCATCGCGATTTTTGCGGAGAAGTGAATGTGGGAAATGTTTGTGGTAA TGATGTTGAAAGTAATGGTATGGTTCAGTCTTGTTCAACTTTGTTTTGTGAAAATAAAGATATGGCCTTGGAGGCAAAATGTGACAATGGCGTTTTTTGT GGAGAAGGAAATGGTGTTCTTGATGAGAATCCGGATTTGGTGCTGTTAGATTCTGTAGGGGAGGATGATCTTCCTTTTGGTAGGAACAAGCAGGAAAAAC AGTGCGGAGGTGGTTTTTACCCATCTCCTGGGAAGAGTTTTTATCTGAATCGCCTTGAATTTATGGACCATGGCTCCTCGGGTCTTCATCCTTCCATATC TCTCCCTGAACTTCTTTATCCTGTTGAAAGCATTTCAAGGGTGTTTATTGCATCGTTTACAACTGACATAAAATGGTTTTTGACATATTGCAAGATTCCT TTTCATCTGCCAGTTACAATAGCTTGTCATAACACTCAGAGATGTTGGAGTTCAAGACTTGATGATAGGGTATTTGTTCCTTGCAAGGATTATCCTAACC TTGTTGTAGTGTATCCTCCATTTCCCGAATCTATAGCATTTACTAATAACAGCAAGAGGCATGGGATTGCTTGCCATCATCCAAAGTTGATTGTCGTGCA AAGAGGAGATAGTATTCGAGTTGTCATTACATCTGCAAATTTGGTGGAAAAACAGTGGAACAGTGTTACTAATACTGTATGGTGGCAAGATTTCCCTAAT GCCACGTTAGCTGACTTTGCATCACTTTTCCCAAAAACTGATGGTGATATTCGTAAAGATCCAAAATGTGATTTTGCTTCTCAGTTGGCTGGGTTTATGG CATCTCTCATTATTGATGTACCCAGCCAGGCCCAATGGATCTCTCAGTTGGCAAAATATGACTTTGGAGGTGCAGCAGGACATCTTGTTGCTTCAGTACC TGGAGTTCACTTTAATGCAACTGTTATGCCAGAGTCTGTAAAAGCATTGCCTTCTCTTGGTTCAGTTGTGACATCTGTAGTTGGTTTGAGCCATATTTTC CGCTCTGCAGCAGACTCAAACAGTGAAAGACTAAAAGCACTGGCTGCTGTGCTTGGAAAGTTTAGTACGAACTCTTATGGGAGGCTGGAGATTACGCTAC AAAGAAATTTCCACGTGCCTGCTGATGAAAATGCTGTTAGCATTCTTGTTCACAACCCTGATGGAACTTCAGAGGGAGATTATGTTCAACTTGGTTTTCT GCCTAGAAATGTGGCAAAATGGGTTTCTCCTCTTTGGGATGCTGGATTCTTCATGTTTTCTGGATATATTTGTCCAAAAGAAGCCCTTGCAGCTGCCTTA GGAGAAAACTGCACGAAAGTACTACTTATACTAAATGTGTCGAAGGGGCAACGATTTCGAGATATATCAAAGATGATGCAATCTGAACACATTGTTGCAT TTTCCTCACTCATTGCTTCAATCCGAAGATGTTATGGCCTCTGGAGATTGCAAGAGGTTCTAAATCAGTACAGATGGCCTGAATCATTATCATCTGACAT TATATATGGTAAGCACACTTTTCAAATATTAATTTTGGAGTACAATGCTGACCCTAGCTTTTCCATTACAAGTCAATACCAGCAAGCCACACTTATTCTT TTTCCATCCTTTTGGACTATATTATTTCATACCTTCCCTATCCATCAGGTGCATCTTCTATTGGTTCTATTAATTCAAAATTTCTTGCTGCATTTTCGGC TGCTGCTGGGAAGAAATCAATGCAACATTTTGATTCAGAGGAGTCTGATCCTGAATGGGGCTGCTGGAATGCTAGGGAAGAATTGAAGAATCCATCCGTA AGGATCATTTTCCCCACTATTGAAAGAGTGAAGAGCGCATATAATGGAATTTTACCTTCTAGACGTGTTCTTTGCTTCTCAGAGAGGACTTGGCAAAGGT TGAAAACTTTAGATATACTTCATGATGCCATCCCTCATCCTCCGGATAGAATAGGGCATCCAATGCATACCAAGGTGTTACAGAGACGCTTCTGGTCTAG GACGGATGAACATTCCTTTGGTTGGGTATACTGTGGGTCTCATAATTTTAGTGCAGCTGCCTGGGGGCGACAAATTTCAAATCCACTTGGTACCAAAGCT GATGGACCTCATAAAATCGACCCTTCTATGAATTCTGGGCTTCACATTTGCAATTATGAACTTGGGATTATTTTTACTTTTCCTCCTACAGAAAACGATT GTTCTAAAGTTAAAAGCACAAAATTAGATGATATAATTCTGCCATTTGTTGTGCCTGCTCCTAAATATGGATCTAGAGATAGGCCAGCTACAATGCAGGC TATGAGGGAAGTGATAGCTGAGCTTGCTGAGCGTGAGGTGGAGAAACTTGCAGAAGAAGAATTGATGGAAGAGCTTCTTGAGGAAGAGGAAGAAATGGAA TCAACCAATTATGTTGGAGAGGATAAAGAAGATGAAGAAATAGATGCAACCAATTATGTTGGAGAGGAGAAGGAAGATGAGAAGGCATATGCTGAGATTC TTTGGAGTCAGGTTGATTCTTCCCAGAGCAGCTGAACTGTTACAAAAAGCAATACTTGGAGCAGGAAACAGTAATGATGGAGCTGTAAACAGGAGTCTCT GAAACACCATTGTTAACATCAAATGAAGATTACGAAAGGCATGGTTACTGTAGTGATGCAGTGGGTGGCTTTCAAACTCGCATAAATGATGGCAATTATC CACCTTGGGAGGAAGTGAATGCTTGTCCTGAGATATTGGGATTCAGGAGCATAGCTGTTGGCCTCATGTCTAAAGAAAGTGATTTCCTAGAACACAGGAT TCAGGAGCATAGCTGTTAAGTAGGAGATAATTTATTGGAAGTAGGAGATAATTTATCTTCTCTTACCAATAAAAATATTGGAAGTACCTGATAAGTAGGA GATAATTTATCTTCTCCTGAATCCCAATATTGGAAGTACCTGATAAGTAGGAGATAAATTATGATATGTGTACTATTTTGTTTAATTTTAAAAGTATTTT TATATAAAATAATTAAATATGGCACATGTCATAATTTTAGTAGCTAGAGAAAATACTTATATAAGAAAATACAGTATTCTCATATTAATATTCCAAATAA ATACTTGAAAGAGATGGTAGTAATATTTGTGCCTTCAAAATCTCAAACTGACACAATTTAGACTTATTTCTAAATCACAGCCTTTCATCTCACATTCTCA TGCATGGTCTTTAGTCATCTAAAAGACCATTATCTTAAAAGAAGGTAACAATCCTCAACTTGTCTCTCTTTGTTAGAATAGCTTATTTCCTTAAAATGTT AGTTAATCCAATCCTTTTTTTGGCAGTAACAGGATGGAAAGTGGTATGGTCCATTTGCCCTTTACAACAGAAAGTTGATATGTCAAAGCTAAAAGGAAGG ACTGCTTTTTGAGGTCACAGATTCTTTGTCCTAACTGGCTTTTAACCTTGTACCAGAAAATCCTTAACTACACTTACTTCTCTTTTCTATCTTTTTATTC TCCCCTTTCCTTTTCTTTCTTAACTTATTTTCTTCCTCCCCCTTTGGATATTGAGGTGCAAAAAAGCAGCAGCATTTGCTTGAGTTCCATCAAGCCACCT TAGGTAGGCAAATATAGCTTTTTTTGTTATATCAAATGGTTTCAGTTCATGTTATATTGAATTCTAAGATAACTCTATCTTTATATTTCCCTTGAATGAC TAAATATTGGTTTCCATTGCATACTTTGTTTTAGTTTCTTCTTAATTCATCTTTGCAATTTAATGGTTCAAATTTACATCAAGTGTGCTATTAAAATTAA GAGAAATGGAGGACCAACTTTTTTTCATGTCAAATTCTGTATCCATCATTAGAATTTGTTCTAACTATAATAGGACTTCCTAGAGCTTTTGCAATTTAGG GAATGCATTGTTCATAAGTTGGAGCTGCATAGAATATCATTTTTTTAGGTAAAGTCTATTAGACAATCCTTTCTGCTCTAGAGTGATGGTTAGGTAAAGT CTTTCCCATAATGACGACTTTAAGATTTGAAACCCTAATTACGATTGAAATTCATTCTGTATCGTTCTCTAGAGTTGTAAAATATCAGCCACTTCCTATT AAAAGAAATACCATAGTTTTACTAGCCATTTTCTTTCTCATTGTAAAGCAAATAATTTGATATTGTGGGGTCATCATGTGTCATGTAATTATTCAAGTCT TTATAATCCTCAACCACAGTACTGTAACTTGTTTTGTTTATCTTCTTTTGACACAACTCTTAGCTTGAATGGTTTTTCTCCTTTGCTAAAGTATATATAT ATATATATATAAGGCATGTAGATTGCAAATACATAGGAATCAAGATTAAATATGTTATGGATCATTCTTATGTCTGATTTCCAATTTGCTAAACTATAAT CATGAATGCTGCATGTAAATTAAAGTGCTCTCTAAGTTATGAGAATGGAGAAGCCACCAATCCATGGTGCAACATCTGATTGTAAACCAATAACAACATT TGTTCACACAAATTCAAGTGCATTCATGGAAGTAGTACAAAGATTAACAGGTCCATCAGAAACTACAGCAACAAAAGAAGGAGATGCAGCAACAACAACA AAGGCTCCTACTCCTACTGTGAAGAGAACAATAACCAAACTACATGAGAGAAGAAAATGCATGAAGCCAAAACTTGAGATAGTAAAACCCACTTTTCAAT ATAAATCAGGATCAAGTCCAGGAGGATCAAGAAACTCTAGCTTTCCTCCAAGCCCAGGATCAGGGAGTTCAAGTCTTCTTCAAAGTCCAACTACTCCTTC AACTATTTTCTCAAGATTAACTCTTCTGGTGGAAGAAGATGAAAAGAAAGAAGATTCAGCAATACCTGAAATAAACACTGAAGAAGAAGAGGAAGCTATT AGAGAGAGGAGATTTTATTTGCATCCATCACCAAGGACTAAACAAGGATTCTCTCAACCACAATTGCTAACTTTGTTTCCCATGGCATCTCCAAATACAT TTGATAAAGTTTCATTTTGAAGATCATAAGCTGCCACACTATTATCTTTAGCTATACATGTACTCTGACTTATTGAATGACATTTGCAACTTATTCCTTC TTATAATCATTTCCTTAATTTAGTAATAACTACCCAAGTTATTCATGTATCTGTATAAGGTGTTATTTTTTTGGCTCATATTTAAAAATATATATATTAC ATGTTCATTCATAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_142579; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_283164
| Blastp | Tyrosyl-DNA phosphodiesterase 1 from Arabidopsis with 25.37% of identity |
|---|---|
| Blastx | VQ motif-containing protein 31 from Arabidopsis with 47.73% of identity |
| Eggnog | tyrosylDNA phosphodiesterase(ENOG410XQPZ) |
| Kegg | Link to kegg annotations (AT5G15170) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464339.1) |
| Pfam | FHA domain (PF00498.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |