| Id Trinity | TRINITY_DN46185_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_281835 |
| Sequence | CAACAACACAACACAATGACACTCATAAACACCATTAACGAAAAGCATCTTCATCCTCTTCTTCTTCTCTCAATTTGACTCGATCCATCTTCTTCAGTTT AATCTTGTTCTCTTTTCAGATTCAACGGATGCATCTCCTGGGTTTTGAACATATGATTTCTCATGCTCTTCGTTTTTAGAAGGAAAGGATATGCCATTTC AGGCGTCTGTTATGTACAATAAACTTTAGATTCTAAAGCATGGAACTTTATTTACTGCCATCTCAGTGTATGTGACAATCAAGGAAATTAATCATGGCCC CTTCTAGGAAATCTAGAAGTGTAAATAAGAGGTTTTCTAATATCCATGAAGCTGCATCCAGTAAAGATAAAAGTGAAGAGACTGCTAGCAAGAATAAGCA GAAGGCGAGTCTTGGTACTCAGAAGAAGAGAAAATTAGCTGACATGTTAGGGCCACAATGGAATAAGGGGGAGCTTGGGCGTTTCTATGAATCTTACCGT AAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATCGATCTATGGAAATGGTAGAAGCCCTGTACACCATGAACAGGGCATACTTATCTC TTCCAGAGGGTACTGCTTCTGCTGTTGGACTGACAGCAATGATGACAGATCATTATAGTGTACTGGGAGGGAGTTACAGTGGAAAAGAAAGCAATGAAGA TGCAGAAATATCTAAAAAGCCTAAAAAACGTTTGCGGGGAAAGCATCTAAATGACAGTAAAGCATTAGATGAATTAGATGAACACTTTTCTGATCATTCA CAGTCACATTCCATTGCATCTGGTGATGGTTGCCTGTCATTATTGAAGAAGAGGCAGCCTGGAATTAAGCCTCATGCTGTTCGGAAAAGGACTCCTCGTG TCCCTATTTCACATTCTATTGGTAAAGATAACGGAGAGAAGATTTTTTCATCTGCTAGGCAGCGCAACAAACAAATGGTTGACAGTAATGATGTTGCTCA TAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGTCTCTTCAACTATTTCTGGATCACCAAACAAGAAAACAGTGGCATCGCCTGGTCAGAAA AGCGGAAATAAGCGTGCTAGATCAGAAATTGCTGTATCCAAGTTTTGCAGCTCTGACCTGGATAAGGGTAGTTCTGAGTTGAGTTTAGGTAGCACAGAAG GTGATAATGGATATTATTCTAGGGAAACAACTCATTGGAGCAGTATAGACAATACTGGAAGAGGAAGGAATCATAAAAAGAGATTAAAACACTACAATAA GAATTTAGAACCAGAGGAAAAATTAAACAAGGATTTGGATGACATAAAGGAAGCCTCCAGTGGGACAGATGATGGTAAAAATCTGAGTTTTTTCAAATCC CATTTTGACACTGATTTTACTGATGCAAAAAAAGCTAGGTCCTCTTATAAGGGTTCCATGAAGAGAAGTAAAAACCTACTGATTGAGAAAGATGAAGGTT CTGCTTTTGATGCTCTGAAAACTTTGGCTGATCTATCTTCGATGATGCCTGAAACAAACCCTAACATTGAGCCATCTGCACAGTTCAAGGAAGGAAACCA TGATATTGATGAATCTAAAATGAAAACACATAATGTACGGAAGATTGAAAACACTGCTTCAAGTAAACATGGCAAGGCTTTTTCTGACAGTATAGCTGCT GGTCATAATTCAGAGGGAGCATACCAGCTTAATGCAGGAGGCGGGAAAAGGAAACAAAATTCTTTTACCTTGAAGTACTTTGTTGCAGAACATTGAAACA CATACTGGTTCTCTTCTAAGTGGTTCCGAACAGATCAGTATTCGTTCTCTTTTTTGATAGAAAGAGTAATATGTCATTTGCCTCTTTTGGATTTTTATTT TTTAATAAATGTTTGGTTTTTACGTTAGACAGATCTGCTAGACTTTGGATAGAAAATTGCATTTGAAATTTGAGTAGACTTATGTCTGGAATGGGAGCAT TTTTAACATTTGAGTAGACTTATGAATTGAATGTGAGTTCCATTTGAAATCAGATCAATTGATAAAATTTGAAATTTAAAGGTCATTTTTAAAATCTGAT GTTAATAAGGGCACAATTCGAAAATAAAGTTCAAAATAAGGATGTAATGTGTCTTGTAGCCAATTTAATACATCATGTTCTTATGCGTTAATGTGATAAT GTTTACTAGTTACAACTAATGTGACCGACTTTTCATTAAATGTTTTTGCAATTAATAGTGGTTCATTAAATGTTTTTGCACTTAATAGTGGTAAACAAGA AAAAATATTTCAGCCGTGGGATTTTGCAGTAGCTATTTTGAAACTGAATTTTCTTCTGAAAAAGCATTTACCACTGAACGTTGCAACCTGTATTTCATAA GCTCGTCGAATTATTTTGTTTTTCTATTGCGGCTTAACCACTTAAGACATCTGTGGAGTTGCTTTTTCCGCCTTTCTTATGTATTGTTGGAGTTATAATA AAATCAGTAATTAGCATTCACCTAGAAGCTTAATCTTGTAGGATAGTTTCATAAGAGGGCATATTAGATATAAGACATTTGATAAGTCCTCACTGAAAAC TTTAAGCTGTTAAATGCTGTGAGGAGAAGACCCATTAATGATTTTATTACATCTATTTTGTCCATTATCCTTTACATTATGCATTCTTGATAAAACGTAT TCTAGTTGCTTACATTTTGATTTTGGCATTTAGAATTTTCTTTTTTGTATTTTACTTTGTTTTTCGCCAAAAAGTAAAGCTTGTACTAATTGCACTTGAC ATTGACTTGTATATTTCCATTGCCATCTTATAGTATCCAAATATCATCTTCTTCATATAGGCTACTGATGAGATGAAGAAATCCATGGTTAAAGGTAAGC GGTCAAGACAACTGAAAATGGTTAAATTCCCAGGAAAGTTGTCTTCAAGTATGAATGACAAAGGGAAAGGGGATGATTCAATTTTACCCCCCATAAAGGT TTCATCTACTAACCAAGTTAGTCTAGTGAACAAAGGAAAGTCTAGAAGAAAGATAGAAAAACCAATACCAATGGTACAGCGAGATCAAGAGGTGTCTGGA AATATTTTTAGCTGTCAACATAATAATTCCGCTGAATCACTCCAGAGTCGATCTTCTAGTGAAAAGGAAAAGCTTTCTAATTGCCTGTCTTCACAACGTA CACGGAGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTATCCGTGGTTTTCAAAGAGAGAGTTCATGGAGTACTTGGACCATGTTGGATTGGG TCATGTTCCGAGATTGACTCGCATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGAAGACCACGGAGATTTTCAAAGCAGTTTTTGATAGAAGAAAAAGAT AAACTTAATCAATACCGGGAATCTGTTAGATCACGTTATGCTGAAGTTCTTTCTGGTACCAATGATGGTCTTCCTACCGATTTGGCCCGGCCTTTAATTG TTGGGCAGCGTGTTATTGCCATTCATCCGAAGACAAGAGAGATCAATGATGGAAGCATACTAACTGTTGACCATTGTAGGTATCGGGTTCAGTTTGATCA GCCTGAACTCGGGGTCGAATTTGTTATGGATATCGACTGCATGCCTTTGTATCCATTTGAAAATGTGCCCACATCTCTGATACAACATAATGTCGCTTCT GCTAGAATAGATGAGAACCTTGGTAAACTGAAGCAAGGAATGATTGTTGAGCACACAATATTGTCCCCTAGTGAAAATTCAGATACTGTTAAAGGTCTTC ATGTTTCCCCCACTATGCATGGGAGCAGTCCTTTCTCAAAACAGGGGAATTCTTCAGGCTCCAAATCACAAGCAAAAGTTGAGACTGCTAATACCCAACT AGCATTAAGTTCTCAACCTTTCATCCTTGAACATGTCCATCCAAAAGAAGCTGACATATTAGCTATTTCAGAGTTGGCTCGTGCTCTTGACAAGAAGGAA CATGTCTTGTCTGAACTGAAGCACATGAATGATGGGGTATCAGAAAGCCTGAAATTTGGAGGCAACCCAGCGAAGGATACTGAGCCTTTCAAGAGAAACT ATGCTCCAGTACTAAAGCAATTAACTGAAGCGAATGAACAGGTTTCCTCTGCCTTGTTTTTCTTGAGACAACGCAACACATATCAAGGGAGCTCCTCACT TTTGTCATTAAAGCCTGTGACTAATTCTGATGACCCTGGTGGTCAAGCTAGCTCAATCAATTGTTCAGCTTGTATCAACCAAGAATCTATATCTCATGAA CATTTATCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCAAATGTTGGTCGTACAAGCTACAAAGGCATTGTCATTTTTTAAAAAGACAGAAAGTAAGG TTGAAACAATTGAGGACACAATAAATTTTATCAATAATCAGCTTTCAGTGGATGACCCTACTGCTTCAGCCGCAAATTCTCTTCCTGTGAATTCTATTCA TGTCACACAGGCTTCTCAGGATCAACTGATTGCCAGCACATTAAATCCATTGGCAAGTTGTCATCTACAGGAAGCTGAGCTTAACAGATCATCTGACCAA AATGAATTGAACATTCCATCAGAACTCATCTCTCATTGTCTAGCTACACTTGTCATGATTCAGAAGTGTACAGAAAGACAATTTCCCCCTGCTGATGTTG CTCAGGTACTAGATTCTGCTGTCACCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATAGCGAAATACAGAAATGCATGGGTATCATAAGAAA TCAGATATTGGCACTTGTACCTACATAGTGTGGACTCTTTCTCATTTGTTATCTGTAAATCTGCAATAATAATATTAGTCTGTGTCTGTCACCTCACTGT AACATGAGTTCATGGAGGCTGATATGACATACTTACCATTAGCCAGAGGAAATGGGAAGATTATACTGCGTCAATTCTCTTTTCAGTTGTACATATTTTT TGAAGATTGAATAATAGTAAGCTAATATGCCCTACTCTTCACCTGCATTTTGTGTACGATGTTGGCATGTTAAAATGCTAAATATTTTATTTATGCTATT GCCAATTGTGGACAGGCTTATTACTTTTCTATATTAGTAATATATATTCCCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_142805; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281835
| Blastp | Protein ALWAYS EARLY 3 from Arabidopsis with 52.61% of identity |
|---|---|
| Blastx | Protein ALWAYS EARLY 3 from Arabidopsis with 49.63% of identity |
| Eggnog | lin-9 homolog (C. elegans)(ENOG410YA1T) |
| Kegg | Link to kegg annotations (AT3G21430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464007.1) |
| Pfam | DIRP (PF06584.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |