Id Trinity | TRINITY_DN46185_c2_g3_i26 |
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Name Transcript | Ll_transcript_281884 |
Sequence | GGCCCTTTACAATATGAACCGGGCGTACCTTTCTCTACCAGAGGGGACAGCTTCTGTTGTTGGTCTGATTGCAATGATGACAGATCACTATAATGTGCTG GAAGAAAGTGACAGTGAAAGGGACAGCAATGATGCACCGGGATCTCGAAAACCTGTGAAACTAAAGCGTGGAAGATTTCAGCTCAGTGTCTCAAAAGATT CTGTCCAGTCTCAGTCAATTGCTTCTGATGATGGTTGCCTATCTCTATTGAAGAGAAGACGCACTAATGGTAGCCAGCCTCGTGCAGTTGGGAAAAGGAC CCCTCGCATCCCAGTGTACTACTCCAATAAGATAGACGATGGGGAAAATCATATTTTGGCTAATAAAAGAAACCTGAAGTCAGCTTTTGATAATACTGAT GATGAGGTTGCACATGTTGCAGCTCTGGCATTAACTGAGGCTGCACAAAGAGGTGGCTCTCCCCAAATATCTCAAACACCATACACAAGATCACAGCAAA AGTCCTCTCCTGTTCAAAGCTGGGAAAGAATGCACCAGCAGTCTAAGACAGTTCCTACCAAGTTTTATGATGCTTCTATGGATGAAGAGTTCTTAGAAGG TAGTATAGAAAGCAGGGGAGCCGAAAATGGAGAATGTGCTAGAGCTACTAGTTCCTTGATGGACCTGGGATCCATAGCCACTGTCGAAGTTAATCAGAAA CGGGAAAGTAATTACAGAAAGAAAGGGAGTGTGGAAAATGTTGGAAACCATTTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACTGAAGGACTTAATT TAAGTTTGAAAGGAAAAGTTGATATTGAGGTTACTAATGCAAAGCCTGAGAAATTCTCCCAAAAAGGCCAGAGGAAAAGAAGCAAGAAACTTTTGTTTGA AGATGAAGGCTCTGCCTTGGATGCTTTGCAAACTTTGGCTGATCTTTCTCTAATGATACCACCTTCTACAACGGAATCTGGTAAGAATAAAGTTGTTGAT ATATTTTATAGGGTAAGAGACCTTAACAAATTCACATTCTCATGCACAGAGTAATAGCCAACTTGGAAACTTTCCAGATTTTAGCGTTTTTACGCTGAGA GTACGTGGATAGTCCAGTAGAAGGAAAAAACATCCATTTTTCAACTTAGGCTGGCATGATTAGTTGTGCTTTCAGTCTCTTCATATTATTTGGGAGTTGG GATGAATATTTTGCTCACTTTCTCATTTAACAAATTCCCTGAACTGTACTTGTTGCTACTCCTGTTTATTTTTATTGTTTTAGTCATTGTGATTTTTCAA ATTTTATTTTCTATCAAAGTTCTTCTAATCCACTATGGTCCTCCCCCATTTCCATCTAGACTCACCTGTCCAGATGAAGGAAGAAAGAATGTATGCTGAC AAAGATGTAGAGTCTGTTTTACCTGAAGCCATATCAACCAGCCAAAACAGAGATAGAATTAGACTCCCAGGTCAAAAGGCTGTTCGTGCAGTCCCTGGAG TTGAGGTTTCAACCCCCAAAAAATCTAAATTTGGAAAGGAATCAGAAAATGATATGCAGCTTCCTTCTGCTGATAGGACATGCAAAAGAAAGGGAAAGTC TATGGTTTCAAAGGTAGCAAATGCAAAGCCTGATTCTTATCCAACTGATCACTTAAATAATGAGGCTGGAGATGAAGAGAACAAATCGGTGATTAAAGGA AAACGCACTGATCAGACTTTCACTATAGCAAAACAATTAAAGTCAGTCAGTTCAACAGAAAGTCCTTTGTGTAGTAGTGACACAAAAAATTTAGCAGGAT CAACTGCAGAAGTCCCACTTGCAAGTGAAATTATTTTACCAACTAAGAAGAAAAGTAGACGTAAGGCAAGTTTACCGAGAGCATTCATGGCCAAAGAGAA GTGTTCTGAGAACATACTGACAAGCCAGCCTAACAGTTATTCAACTCCCATCCAGGATAATGCATTATTTTCAAAGGAAAAGCTTTCTAGTTGTTTGTCA TCGTATATGTTTCGCAGATGGTGTACGTTTGAATGGTTCTATAGTGCAATTGATTATCCGTGGTTTTCCAAACAGGAGTTCATGGAATACTTAAATCATG TTGGTCTAGGGAATATCCCAAGGCTAACTCGTCTTGAATGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTTCATGA AGAAAGACAAAAACTAGAACAGTATCGGGAATCTGTTAGGAAACATTACACTGAATTACGGACTGGTATCAGGGATGGACTTCCAACAGATTTAGCTAAA CCTTTATATGTTGGACAACTAGTAATTGCTCTTCACCCAAAGACAAGAGAGATCCATGATGGAAGTGTGCTTACAGTTGACCATGACAAGTGCAGGATTC AGTTTGACCGCCCAGAATTGGGTGTTGAATTTGTCAGGGATATTGATTGCATGCCTTTGAATCCATTGGAAAATATGCCAGAAGCTCTGAGGTGTCAGAT TGGTGCTGGCAATATCCCTTGTATGAGTAAAGAACCACAAATGAAGGGGAATTCCAGTTTTGGTGGGTGTCTGCCGAATGATTCAAATCGACCTGTGGAA AAGCCACCAGCGTCTTCAATCTCTCTCACTAAGCAGGGAATGGGGGGTGCTAACAATTCCGTTTCACAAACAAACGCTGCTATTACTAATTACCTTTGTA CACAACCAGCAATATGTGCCCAACCATGTACAGTGACCGATCGTCAAACTAAGGAAGCTGATATACATGCCCTGTCTGAGTTTACACGTGCTCTAGATAA AAAGGAGAAATTAGTGACAGAACTAAAAATCGCCAATGATGACATATTGGGAAACCAAAATGGTTTAGAGTGCTTCAAGGATTCAGAGGCTTTCAAGAAG CATTATGGCATGGTACTTGTACAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCACTACTTCAGTTGAGGCAACACAATTCTTACGTAGGAAACTATT TACCACCATGGATGAAGCCCCCAGTAAGTTTCAATGTTCTGGACAGTCTTCCTAGTGGTAGTGCTTTGGATAGTTCTGTGGCACAAGAGTTAGGGTCAAT TGGCATTGATATTATTAAAGGATCCAGGCTTAAAGCACGTGCCATGGTCGATGCTGCATTTCAGGCCATGTCTTCAATGAAGGAAAGCGAAGATGGTTTC ATGAAGATTGGGAAGACATTGGATTCTATCAACCATCAGCCTTTGGCCACGAACTCTAGCTTACCTGTGATCAGATCCCAAGAGCAAGTAAATGGCAGTT CTGATTACCATAATAGGTCAATTTTCTGTTCAGCTGAGCCCTTACCCAATGATGATGCACCTGGTCCAAAATTGCATCATGATTCTGTCAAAGTTGATAC TCAAATTCCTTCAGAGCTCATAACTTCTTGTGTTGCTACATTGATCATGATACAGAATTGTACGGAACGTCAATA BLAST |
Tissue | pods |
Gene name | LI_gene_142809; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_281884
Blastp | Protein ALWAYS EARLY 3 from Arabidopsis with 41.42% of identity |
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Blastx | Protein ALWAYS EARLY 3 from Arabidopsis with 41.42% of identity |
Eggnog | lin-9 homolog (C. elegans)(ENOG410YA1T) |
Kegg | Link to kegg annotations (AT3G21430) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019440561.1) |
Pfam | DIRP (PF06584.12) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |