| Id Trinity | TRINITY_DN46205_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_320705 |
| Sequence | TGTAATTGAACTTCACGGTTTATTATTTATTAATACTCCCCAATTATAAACTAAACTAGAGATAAATAGTAACAAATTTAGGGACCGAAAATATATTGTT TCAAAAGGTTCAAATTGCAAATAAAATTAATGACCATGTTATCACTATAGCACAAGCCACAAGGTTGGGGTTTTACAAAATCTCTATTCTTCTTCTCAGT TTGGTTCAGAATAGCTAGCATAGAGAGTTAAAAGTGAGAAAGCGATGGAAGGTGTATCCTACGCGCGCATGCCCAGAGTCAAAATCCGTGAACTCAAAGA CGACTACGCGAAATTCGAACTCCGCGACACCGATGCCAGCATCGCCAACGCGCTCCGGCGCGTGATGATCGCCGAAGTTCCCACAATCGCCATCGACCTG GTCGAAATCGAAACGAACTCGTCGGTGCTGAACGACGAGTTCCTAGCGCACCGGTTAGGGTTGATTCCTCTGACGAGTGAGAGAGCAATGTCGATGCGAT TCTCGCGTGACTGTGACGCGTGTGATGGTGATGGACAATGCGAGTTTTGTTCCGTTGAGTTTCATCTCAGAGTGAAGTGTATGACTGATCAGACACTAGA TGTAACGAGCAAAGATCTTATAAGTTCTGATCATACTGTTACTCCAGTTGATTTTAATGATTCTTCTCTTATTCAATCATCTGATGTTAATACTAATAGG TATTTCTTTTTCTTCTTCTTTTTAGGGTTTCGTTAAAAGGGGTTTCTTTGTATTTAACTCGGTGTTTTTTTTCTTTCTATTTCATTTAAATGGGTCTTCT TCGTTTTCAATTGGGTATTTGTTTCTGGCTTAAAGCTTTTGTTTTTAGTTTTTTGTCTCGTTTTTATGTTACCTTCATTTTCAACTGGCTATTTGTTTAT TTATTTATTTAAATGCTGTTCTTTGTTTTCAAGTTTCAACTGGGTATATTTGTTTTCCTCTCTTTTCGAATGGGTGCTCTGGCATAATTATTGTTGTTGT TTACGTTAATAACATGACAATATTAATTTTTTTCAACTGGGTATTTGTTTTTCTTGACTGGCCGACTAGGCAATCCAATCTTGCATTTTGTTTGTTGTTT TCCTTTATGCTGTTACTGTATAAATTGTTGGGATTTTAGGGCAAGATAATTTTTGGTTTAAATCTTAGTGCAACTGTTTAGTTTTTGAGGGAAAGAGAGG GTGGCCCAGCGTACGAAACACCTGTGTGGTGTGGTACGATTATGGTAGATATTTGCAGTCCTATCCTGCAAGCGTAGAGGTTATTGAACCTGTGAAGCTG GGACATCCAGGTCACATGGTAGCAACAATCTTATTATTGCACAAAGGCTCACCCTCAAATTTTGGGCAAAATAATTGTTTTTTAAAATCTAATTTAGATG GCTCTTCTTTGTTTTAAACTGGGTATTCTTTGATATTTGTTGTGTTTCTGAATGCTATGGCATTGTAAGTTTTTGGTTTCATAGTAGAATTGTGTAATTT GAGTTGTTCCAATTCAGGGGGATTATAATTGTGAAGTTAAGGAGAGGACAAGAGCTGAAGCTTAGAGCAATAGCTAGGAAGGGTATTGGTAAAGATCATG CTAAATGGTCGCCTGCTGCAACTGTCACTTTCATGTATGAACCAGAAATCCACATAAATGAGGATTTGATGGAGTCCCTGACACTTGAGGAGAAAAAAGA ATGGGTTGAAAGTAGTCCTACCCATGTGTTTGACATTGATGTAGTAACTCAACAGGTTGAGTTTTTTCTGATTTGTTTTCTTTAAATTTTGGTTATGCAC TTCAGACTGATTTCATCACTACTGCTAGTATTACTATTATCTGATCATTATCTGGTGCTTAATATTTGTTTTGTTGCTTACATTCCTTTTTTGAAATTAT CTCAAGACATGCACTTTCGGTACCTCACTAATTGTTTCTGGGCAATCTGTGATAATATACTTGTCTTGTACGCTATGTACTGTCTATAATGCGGCTTGTA AGCTTGTTTTGATTTTAGGGTTTAGATAGAATGGAGAATATAGAATTAGGTAAGATAAGTATGTTGGATAACAAATATTTTTCTGCATCTCTTTGACCTT TTGCATTGAAGTGGACAAGAAAGTATAATTAGACGCACTTGTTTTTTTTCTGCATTCAATGATAGAACCTGTTATTTGATGTTATGGAATGATTGCATGG TGCTTCCCGGGAGTAAAATTTGTTTGTTAGTGAACTTGAAGACTGTTTTTTCAATTGTTTATGGGGACAACCTCTAATGTAAGCTTACAGAACCATACAT ATATTGAAGGCATACACAGCAACTGAGGGACCAATATTCTCCAGTTTTTCTTCCCTCAATTTTTTTCTTCTTCCCTTTGCCATTAATCCTTTAGAATGAG AGGGGAATTGTTTTAAATTGCTTCCGTCACTCCGATGTCGAGGCTGGGTAATAGGAAAATTCTTCACTTAAAACTTCATGCAGTGTCATTCTGGAAGGTG AACAAACTTGATTCCTGGAAAGATTTTGCATATAAGATACAACTTCAGTGCTGAAAGTGTAAAAAGAGACATTGCTGGAATGAAGGTCAAGGATTTAACT GCATCAAGACTAGTCTGGTCCTAAGCTGCCAATTCCTTAATGAATACGAGTCTGAGGCTGTACATAAATTTTAAATAAGATGTTGGTATCAAGATTTGTG ATACATCTATAGCATAAATGATTGTTGCAGCATCTCCAGGAGCATTATCTGGATTATGGAGAAGATATTGATACACTTTCTGCCAAAGCATTAAGAGTTA TTGAAATTGATGTCTTCTCTATCCAACTATTTCAACCACTTTGTGCTGTATACATTTTTGTCTTTGTCAATTGTTGATATATGTTACTGAATACCCATTT CCGTCTTATAATATATTTCTTTTATCAAATAAAGAAACATTTGAAGATTCTGTTTGTGATTTGGTACTATGAATCCTTCATTGGTGTATTTTGCATTATT ATTATTATTAAAACGCTTAAATATATTTTTAGCCCCTGCAAATATAGGAAAATTTGGTTCTAGTCATACAATTTATTTTTAAGTTTTAAGTCTCTACTTT AGTTGATCAGTTTTTGTTTTAGTCCCTGTTACTCCATTAGTGATGCATCTACACCACAATTGGTCATGTCATCTATTAATATGACATGTGTCATATGTGA GTGTTAGCTACATTATCATTAGGAACTAAAATCAAAATTTTGGAATATAAAACAAAAAAAGTAAAATTGTAAGGACTAGAACCAAAATTCGGTAAATCTC CATGGACTAAAAAGCATATTTACTCCTTATTAAAACATAAAGATCAAAGTTTGCAATCCTTTGGTTGCTCTGTCTTGAGTTCATTTATTGTGGCTAAGAT TTTAGCTTTTTATCAGGTTACAGTGGTTGATCCTGAGGCATACACCTACGATGATGAGGTGATTAAGAAAGCAGAAGCAATGGGCAAACCTGGACTAGTA GAAATCAATGCAAAACAGGATAGCTTCATATTCACAGTTGAATCTACTGGTGCTGTTAAAGCTTCTCAGTTAGTACTAAATGCCATAGAAATTCTCAAGA CGAAGCTGGATGCTGTGCGGCTATCCGAAGATACCGTGGAGGCTGATGACCAGTTTGGTGAGCTAGGTGCGCATTTGCGAGGGGGTTGATCAAGTCGGTA TACCGTGGATGCTGTGTTTTTCCTGAACTTGTTTTGTTGCATGCTGTGCTTAACTGAATAGCTGCCAGCAGGTGCTTCCTCATTGCACCAAAGATGCTAA TTGTCATTATGATCCCTTTTATATAAACAGTTATCTTTCAAATTTAAGCCAATTAAACAGTGCTACCATGTGATATAATCTATTTTCTTTTTCCTGTCAG TTGTGGGTATGGTATGTTGATGTTTACACTTGAAGCAGTTGTGCTTTCATTCCATCCACTTTTAAGTATATAAATGAATTTAGGAACTGGTATTCACTTG AGCTTTAAAACATCTTTGTCATCAGTTGCAAAGGGTAGAAAATCGTTAGTCATTGAGACTAACTACTTATTTTCACCACTTACAAGTTACAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_142941; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_320705
| Blastp | - |
|---|---|
| Blastx | DNA-directed RNA polymerases II, IV and V subunit 3 from Arabidopsis with 81.08% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0202) |
| Kegg | Link to kegg annotations (AT2G15430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445856.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |