| Id Trinity | TRINITY_DN46219_c2_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_319418 |
| Sequence | TTTGAACTGTTTTTGTTGATGAGTTTTAGGTTTAGGTTGCTGGTGAAATTTAATTAGAATTTAATTAGAATTGAATTAGTTGTTGAATTGCTTAGGTTGG TGTAGAATGTTCCATTATTCATCCTTTGGAACTACTGTGTAATTTTAGGGCTTGTTTGTTGATTTTTTTTTCCTCAAAAAAATATGAGTCTTTTTTATTG AACATCACTTCTGAAATTTGCATACTCGTTTGGCTGGGCTTTTACAAATGCTGATGAAAACAGTTCCATTTCAGTTTTTTTAGAGTTAAAATTTTCAGCT TCTCAAAAAATCACTTTTGCTAAATCACCCTTTTAAAGTCCAAACAAACAGGCACTTAGTGAATTTAGTTTCACGTTACATGTACGAATTTCCCAATGCT GACAGGTCCTGCTTCTAGTTTTTCTCTTATGGGGAATTTGATTTCAATGCATTTGTTTTGACAGTTTTCTTGGCTTAATTTGCAGATATAATTTCTATTC TGTTAAACAAATTATATAACATGAGTACCACAGTGCAAAGAACTCCAAGATCTGGTAGGCAGTCATTATTTTTCCAGGATTTAGCTTCACCTGTTTCAAC CCGGAGAGGAAAGTTTTCGAGTCCAGGCCAGACATCTGCAGTATCTACTCCATGGCATGAGAACTTTGGTGGGTTGGACCTTCCACCACCTCCTTTTTAC ACCTTGGAAGATAGATCAGACTTTTCTCCCGAATCTGGTATACCCGATTACCAAGTATCCCCAGAGACCAAGTCAGACCCTAGAACTCGAACCCAATCTT CAAACAGAGATTTTTCAACTCCGCTGAAAACCAAATCAGAGGCCAGCACATCTTCTGCTTTAAGAGGGGTGCAGCAAAACCAACAGGGCTCACCCAGTTT GAATTGGTGGTCACCTGCAAAGAGTGGCAGTGAGCAAGATGACAAGAGAAAGAGTTCACCAGTCAAGGGTGTGATTCAGCCTGGCGCTTTGATAACTCTT CCTCCACCACTGGAAGTGGCTAGGCCCGAGGTTCAAAGAAATTCCTTGCCAGCAGGGAATCTCAATGAGGAAGAGTGGGTCACTGTTTATGGATTTTCTT CAGGTGATACTAATTTGGTTTTAAGGGAGTTTGAAAAATGTGGTGAAATTTTGAAACACGTACCTGGACCTAGAGATGCTAACTGGATGCACATTTTGTA CCAGAATCGATCTGATGCACAAAAAGCTCTTCACAAGAATGGAATGCAAATTAATGGAGTCTTGATAGTAGGTGTGAAACCGTTGGATCCCATGCAACGC AAAGCTTTGAATGAAAGACAGAACAATCAGGAATTCATGCCTTTACCTCTATCGTCTGCTAGACTTTCAGAAACGAGCACATTGAGAGCTTCTTCTCGAC CCTATTATCTTCAGAATGGCAACTCAGGTGTACGCCAGACAGGAGCTACCATTGCTTCGCCAACAAAATCATTGGTATCCAAGGTCATGGATTTGATGTT TGGAGTCTAGATTTGCTGTTGTGGTGAATCAGCCTAATATCATTATGCTTTATATGTTAGTTTCTACTATTCATACACAATGCAGAGTTAGGGCATGTCT TCTTTATTGGATTTGAGTTGTGGAACATTTGTTCTTTGGATCCCAGTTTTTGGAATTTGTGACCTTCAACATTTGCAGTTTTATGGTGTTATATAGGAAA TGAAATACTTGTAGCCATATATGTTGAAATCATAAAATACAATTACAGTGGATCAATGTTTATGTAAATCTGATGACACTCCCTTAGTTATGTCTCAACT CTCAAGTCATAATAATAATTTTTTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_143041; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_319418
| Blastp | Nuclear pore complex protein NUP35 from Arabidopsis with 70.18% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP35 from Arabidopsis with 70.18% of identity |
| Eggnog | nucleoporin(ENOG4111ARE) |
| Kegg | Link to kegg annotations (AT3G16310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448175.1) |
| Pfam | Nup53/35/40-type RNA recognition motif (PF05172.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |