| Id Trinity | TRINITY_DN46280_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_318967 |
| Sequence | CTTTTATTTTACAGATTACCCAAATGGTTTTCCAATTTCTCAATTCACCCCTTAAAGTTCATTTATTTGAAGTATTAAATCACCTTATACTTGAACAATT GCACTTCTGATTCAAGCTTTGGTTTCTCTACTCTTTCCATGGCCACTCTTCCAATACTCCAACACGAAGAAAAGATAATACAAACCGTTAACCAAAACCC TGTTGTTGTAATCATTGGAGAAACCGGTTCCGGAAAGAGCACACAACTCTCTCAGATTCTTCACCGCCACGGTTACTCCAATTCCGGCAAAATCGCCGTC ACTCAGCCCCGCCGTGTCGCCGCCGTATCTGTCGCTAGACGAGTTTCTCAGGAGCTTGGGGTTCATCTTGGTGAGGAAGTTGGGTATGCAATTCGATTTG AGGATAGGACTTCACATGACACACGCATAAATGAGGGTCATTTGATTTGACTTAATTTGATTAGATACCTAACTGATGGGGTCCTCCTCCGTGAAAGTCT AGCTGATCCCGAGCTAAATGATTATTCTGTAGTCATATTGGATGAAGCTCATGAACGAAGTTTAAACACGGATATATTGATGGGGTTGATGAAACGCTTG GTTAAAGTTCGTTCCTCTGACTTCAAAGTTTTGATCACATCAGCGACTCTTGATGGCAATAAAGTATCTAAGTTCTTTACAGATTGTCCTGTCTTGACAA TTCCAGGAAAGCTGTACCCAGTCGAGATACTTTATAGCAAGGAGCGCCCCTCAAGCTATCTCGAGTCTTCTCTGAAAACAGCTCTTGGTATTCCGAGGAG TTTTAACTTCATCTTCTTTCCATAATACATGTTTTAATAGTACCTATAATTTTTAGTATACCGTGCATGGTGTCTAAATAAACTTGCGCTGGCACCATGT GGTCAGACAAAAATTATGTCAATATGTTAACTTTTTGCCTGGCTCATTGCATATGATATAAACTCCTACATGACATGCGTTTTGTCATCTGTTAAGCTTT CTCTTTAAAAAACTGGTATTGGCCCTTAAAAAGAGCATGATAAAATTATTGCATATAAGTAAACAAGATGCTAAGGCCTAAGAGGGTGATGCATTTTAAA TCTGAATTGTGAAATTGTTGATATTGATGTAAAATATTACACTCATCTCCTTTAGGCTTTAGCTCCTTCGATGATTCAATGGCTGGTAACTTTTCAAATA GAAAGTCAGGAAATATTGTCAAGTTCTATCAACTTGACCTGTATGCACTCCAGTTCAGATGTACTATTTTCTGTAGTTTAACCTTTTATTTTCAGATATA CATGCTCGTCAACCAGAAGGGGATATTTTAATATTCATGACTGGACAGGTGAACATTTTGTTATATGGATGATATAGAGAAGTTGGTATCTAAGTTGGAA GATAAAGTTCGGGCTCTTGAGGAAGGTTCCTGCATGGATGCTATAATCCTTCCCCTACATGGTTCTTTGCCACCTGAATTGCAGGTGCGTGTATTTAGTC CCCCACCTCCAAATTGCAGACGAATTATTGTTGCAACAAACATTGCTGAAACTTCTTTGACTGTTGATGGTGTAGTGTATGTCATTGACTCTGGGTATGT GAAGCAAAGGCAGTACAACCCATCTGCTGGCATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAATCAGCGTGCAGGCCGAGCTGGACGA ACTCGTCCAGGGAAATGCTATCGTCTATATCCTTCTCGAGTTTATGATGATGAGTTCTTGGATGCTACAGTTCCTGAAATACAGCGATCTTCTCTCGCTG GCTGTGTTCTTTACTTGAAGTCATTGGACCTTCCAGATATTGACATTCTCAAATTTGACTTTCTTGATCCTCCTTCATCTGAGTCCTTACAAGATGCCTT GAAGCAATTATATCTGATTGATGCAATTGATGAAAATGGTGCAATTACAAGTATTGGACAAAAAATGGCTGAACTTCCGTTAGAACCATCCCTCTCGAGA ACCTTAATGGAGGCAAACAATTATGGTTGCATTTCCGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTGCATTGCTATCAGCACCAGGGCGGA GCAAGACTGAGAGAAAGAGGAAAAACCCAGTAACTAATCTTCCTGATGGTTCTGGCTTGGGTGACCACATTCAATTGCTGCAGATATATGAGTGTTGGGA TCAAACTGATTATGACATTGGTTGGTGCAAAGATAATGGCTTGCAGGTGCGAGGGATGTTGTTTGTTAAAGATGTCCGTAAGCAGTTATCTCAGATAATG CAGAAAATAGCGAAAGTAATATTGAGCTATGGCAGATGCTTAAAAGAGTAAAAAGGGATAGACATTTTACCATAATGCGATTAAATTATTACACGGAGAT AGATCATTTTCTTCGAAGGTATAACCATTCTGCCATCATTCACAGAATAGTTAACTGTTTCTAGTATAACCATTCTGTTCTGACTTAATGTGTGGGGAAT CTGTTGGTCAGTTGAGCTCATCTCTGATAATTAGATCAACCAGTATGCACCCCCTACACACACACACAAAAAAGCGAATAAGTAAATGGAATTAGATCAG TGGAAAAGAATCAGCGTCTCTTCCTTTTTTTGACTAGTATATTAGTGAATCCTTCTGCCAGTTTTCATTTTTTTCTACATTCTTTCCTCCCCCCTTTACG AATATTTTTTTCAACCTTGCAATAGGACCATTGGATATAAGGGCAAATGGGAAAGGAGAAGAGTTCCGCAAGGGTTATCGAAATTTGAGAAAAGCTTTAT GTACGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAATTCTGGGTTTTCAAGCCCAGGTAGTCCAGGTGCATCCATCATC CATGCTGAAAGCCGATGAACTGGGCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_143469; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_318967
| Blastp | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 80.86% of identity |
|---|---|
| Blastx | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 80.86% of identity |
| Eggnog | helicase(COG1643) |
| Kegg | Link to kegg annotations (AT1G27900) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460163.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |