Ll_transcript_318971

• Id Trinity: TRINITY_DN46280_c0_g1_i16
• Name Transcript: Ll_transcript_318971
• Sequence: CTTTTATTTTACAGATTACCCAAATGGTTTTCCAATTTCTCAATTCACCCCTTAAAGTTCATTTATTTGAAGTATTAAATCACCTTATACTTGAACAATT GCACTTCTGATTCAAGCTTTGGTTTCTCTACTCTTTCCATGGCCACTCTTCCAATACTCCAACACGAAGAAAAGATAATACAAACCGTTAACCAAAACCC TGTTGTTGTAATCATTGGAGAAACCGGTTCCGGAAAGAGCACACAACTCTCTCAGATTCTTCACCGCCACGGTTACTCCAATTCCGGCAAAATCGCCGTC ACTCAGCCCCGCCGTGTCGCCGCCGTATCTGTCGCTAGACGAGTTTCTCAGGAGCTTGGGGTTCATCTTGGTGAGGAAGTTGGGTATGCAATTCGATTTG AGGATAGGACTTCACATGACACACGCATAAAATACCTAACTGATGGGGTCCTCCTCCGTGAAAGTCTAGCTGATCCCGAGCTAAATGATTATTCTGTAGT CATATTGGATGAAGCTCATGAACGAAGTTTAAACACGGATATATTGATGGGGTTGATGAAACGCTTGGTTAAAGTTCGTTCCTCTGACTTCAAAGTTTTG ATCACATCAGCGACTCTTGATGGCAATAAAGTATCTAAGTTCTTTACAGATTGTCCTGTCTTGACAATTCCAGGAAAGCTGTACCCAGTCGAGATACTTT ATAGCAAGGAGCGCCCCTCAAGCTATCTCGAGTCTTCTCTGAAAACAGCTCTTGGTATTCCGAGGAGTTTTAACTTCATCTTCTTTCCATAATACATGTT TTAATAGTACCTATAATTTTTAGTATACCGTGCATGGTGTCTAAATAAACTTGCGCTGGCACCATGTGGTCAGACAAAAATTATGTCAATATGTTAACTT TTTGCCTGGCTCATTGCATATGATATAAACTCCTACATGACATGCGTTTTGTCATCTGTTAAGCTTTCTCTTTAAAAAACTGGTATTGGCCCTTAAAAAG AGCATGATAAAATTATTGCATATAAGTAAACAAGATGCTAAGGCCTAAGAGGGTGATGCATTTTAAATCTGAATTGTGAAATTGTTGATATTGATGTAAA ATATTACACTCATCTCCTTTAGGCTTTAGCTCCTTCGATGATTCAATGGCTGGTAACTTTTCAAATAGAAAGTCAGGAAATATTGTCAAGTTCTATCAAC TTGACCTGTATGCACTCCAGTTCAGATGTACTATTTTCTGTAGTTTAACCTTTTATTTTCAGATATACATGCTCGTCAACCAGAAGGGGATATTTTAATA TTCATGACTGGACAGGATGATATAGAGAAGTTGGTATCTAAGTTGGAAGATAAAGTTCGGGCTCTTGAGGAAGGTTCCTGCATGGATGCTATAATCCTTC CCCTACATGGTTCTTTGCCACCTGAATTGCAGGTGCGTGTATTTAGTCCCCCACCTCCAAATTGCAGACGAATTATTGTTGCAACAAACATTGCTGAAAC TTCTTTGACTGTTGATGGTGTAGTGTATGTCATTGACTCTGGGTATGTGAAGCAAAGGCAGTACAACCCATCTGCTGGCATGTATTCTCTTGATGTTGTT CAAATTAGCAAAGTGCAAGCTAATCAGCGTGCAGGCCGAGCTGGACGAACTCGTCCAGGGAAATGCTATCGTCTATATCCTTCTCGAGTTTATGATGATG AGTTCTTGGATGCTACAGTTCCTGAAATACAGCGATCTTCTCTCGCTGGCTGTGTTCTTTACTTGAAGTCATTGGACCTTCCAGATATTGACATTCTCAA ATTTGACTTTCTTGATCCTCCTTCATCTGAGTCCTTACAAGATGCCTTGAAGCAATTATATCTGATTGATGCAATTGATGAAAATGGTGCAATTACAAGT ATTGGACAAAAAATGGCTGAACTTCCGTTAGAACCATCCCTCTCGAGAACCTTAATGGAGGCAAACAATTATGGTTGCATTTCCGAGGCTTTGACTGTTG CTGCCATGTTATCAGCTGAAACTGCATTGCTATCAGCACCAGGGCGGAGCAAGACTGAGAGAAAGAGGAAAAACCCAGTAACTAATCTTCCTGATGGTTC TGGCTTGGGTGACCACATTCAATTGCTGCAGATATATGAGTGTTGGGATCAAACTGATTATGACATTGGTTGGTGCAAAGATAATGGCTTGCAGGTGCGA GGGATGTTGTTTGTTAAAGATGTCCGTAAGCAGTTATCTCAGATAATGCAGAAAATAGCGAAAGGACCATTGGATATAAGGGCAAATGGGAAAGGAGAAG AGTTCCGCAAGGGTTATCGAAATTTGAGAAAAGCTTTATGTACGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAATTCT GGGTTTTCAAGCCCAGGTAGTCCAGGTGCATCCATCATCCATGCTGAAAGCCGATGAACTGGGCAAGTTCCCGGACTATGTTGTATACCATGAGCTGATT GCAACTCCACGGCCATACATGAGAAACGTGTGTTCTGTTGAGATGAGATGGGTTGTACCCATTATTAACAAGCTTAAGACACTAGATGTGTACAAATTAA GTGGTGGTGTTGAACACATTGAGGAGGAAACTGAGAGAAATCTCCCAGATTTGCCCAAAAAGGATGTTGAGGTTGCTGCATCCGGTGATGACCGTGAAAG TAGAATACAAGCCGCTAGAGAACGATTCCTTGCTCGCAAAGGCAAAAAATGAGCGCACTTACACTCGAGGAGATCGTGATATTCACATGTTAGGCATTTT AGAAGAGCAAGTCAGTTGTTAAATTTCTCTGAATGCGACAAGCGGGATGAACCCAGATTTAAATTTTCGTGTTATCACAATTCAATGGTTTGATATCATG CCAATTTCATCCTCATGCAAATATCTCTTGCAAGCATAGGAGGATTCAGCGCAGAAAACTTAAGATTGGACTTCATTCTGCTATGATAAATTGGTTGAGT TATTGAATACATTGCTTGCCTTGCAGAGTGTGCACGATATCAAGTATCTTGTTATGCTTCTTTGTTACTGTAATGTAGCTGAAGTGGGAAAGAAGACAAG GAAAAATGGAGAGAAAAATTAGCAAGCCCCTTAAAAAGCAAATGTTGATTGAACAATTCTAAGGGTGTTTTGGCTTTATAGACATCAAAATGAGTTAATT ACCATTTATTGCCACTTTTTCTTTAAAGGTATAATTTTACATTTTCCTTGCTTTGTAACGGGTCATGTAGTCTTTCAGCAATCTCATGAAAAAAATTACA CTTCTAAAATCGGGACATATTCTATCTCAAAAAGTGTATCACTCCATATGCCACTTCGTGTGATTGGTCAGAA
• Tissue: pods
• Gene name: LI_gene_143469;
• Additional information: details;

Expression of Ll_transcript_318971

FPKM

• PAB: 1
• PNAB: 2.2
• PS1: 2.2
• PS2: 1.8
• PS3: 3.7
• PW1: 2.2
• PW2: 1.9
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_318971

• Blastp: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 73.36% of identity
• Blastx: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 from Arabidopsis with 73.71% of identity
• Eggnog: helicase(COG1643)
• Kegg: Link to kegg annotations (AT1G27900)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460163.1)
• Pfam: Helicase conserved C-terminal domain (PF00271.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;