Id Trinity | TRINITY_DN46286_c2_g1_i4 |
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Name Transcript | Ll_transcript_320098 |
Sequence | ATCTTTTCTACAAAATAGTCACTCCAATCTATATATAAATCATAGAAAGGAATGAATAATTTGTATATGGGGTATAATTAATTTATTCCAACTAATATAC AGTTTAGGTTGATGTGGGTTGCTCGAATAAATAAAAGTGCAATACTAATACGTTAGTTCTTTCATCTCTCTCTCTCTCTCTCTTCATATTCGTAGCGTAG GGTTTGGTTTCATTTCAATCCCCACAAAAATCCAATCTTTATGTTAGGGTTTCCTAATCCCACTTGCATATCATCAATTTATCCACTACACTAATTATTA TTGAAGGAGAGTGAGTAATGTGCTGACTTATGGCACTTAAAGTTCCACCTCATAAAGCTGCTGAGTTTGCCATAGGCTCTATCGGGCGTGGTTATGATAT ATCTACTGATCTAAGGCTTAAGTATTGCAAAGGAGATTCCATAAACTCACGTTTGATCGAGATAGATGAAAATGATGGAAGAGAGGTGGTTTTAGCTGGT GGCGTTTCAATACCAAATGTTTCCAAATCAATTAAATGTGATAAAGGGGAGCGCACTAGGTTCAGGTCCGATGTTCTGCCTTTTCAACAGATGTCAGAGC AGTTCAATCAGGAATTATCTTTGGCTGGTAAAATTCCCTCAGGCCTTTTCAATGCAATGTTTGATTTTTCTGGGAGTTGGCAGAAAGACGCAGCCCATAC CAAGACCCTTGCTTTTGATGGAGTGTTAATTACACTATATACTGTTGCATTAGAGAAGTCTCAGATGGTACTCTGTGATCATGTTAAAAAAGCTGTACCT TCATCATGGGACCCACCCGCATTAGCAAGGTTCATTGACACCTTTGGCACTCATATTATCGTTGGTATGAAAATGGGAGGAAAGGATGTAATATATTTGA AGCAGCAGCACTCATCAAACCTCCAACCAGCTGATGTTCAGAAAAAATTGAAGGAAATCGCAGATAGGAGGTTTCTGGATGCCAATGGCCAATATAGTGT TGCTTCTGATCAAGTTTTCCCTAATGATATGATTGGAATCAGGGAGCAGAGGCTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAAGAG GATATTGTATCCATTTTCAAGAGGAGGGGTGGAAGTGATAACAAAAGCATTTCACATAATGAGTGGTTGCAGACTGTTCAGTTGGAGCCTGATGTAATCT CAATGTCCTTTATTCCAATTACATCTCTATTGAATGGAGTGCCAGGAAGTGGATTCTTGAGCCATGCCATAAACCTTTACTTAAGATGTGAGCAAAATTG GCACTTCTATCTTATCAATATTTTTGTGTATTCAATGTTCATATTACTATATGCAAGTGGATTGTAAGTATTTCCCATGGTGTCTTAGACTATCAGGTGC AAACTTTTGAAACAAGAAAGGACACCCTTATTAGTAGAATAGCAATTAAAAGATAGGATGCTTCAAATATATTGTGGGATTGTCCCAGGCCTGGACTTTT GGAAGCTTGTAATTAAAATCCCATGGATCACCATTTTATCATTTATTTGTCTTCATTGTTGGCTCAACATAAAATTATATTAACTAGTTTAAAATGCTTC ATCGGCCTGACTGATTCCTGCAGATAAACCACCAATTGAAGAGCTCCACCAGTTCTTGGAATTTCAATTGCCAAGGCAGTGGGCACCTGTATTCAGTGAA CTTCCTCTTGGTCCACAACGTAAGCAACACAGCTCTGCATCTTTACAGTTTAGCTTCATGGGGCCAAAGCTTTATGTAAACACTACCCAGGTTGATGTAG GTAAGAGGCCAGTGACTGGTCTCCGTCTTTATCTTGAAGGTAAGAAAAGCAACCGCTTAGCCATCCATCTGCAACACTTGTCATCTCTTCCAAAAATATT CCAGCTTGAAGATGATCCAGCCAGTAACTTTCGGCGGGAGTCATATGATAGGAGATTCTTTGAGAAAGTTCAATGGAAGAACTTCTCCCATGTGTGCACT GCTCCTGTGGAATCTGAGGAGGACCTGTCAATAGTAACTGGAGCACAATTAAAAGTAGAGAGCTATGGCCTTAAAAATATATTGTTCTTAAGACTTCGAT TCTTGACTGTGTCGGGAGCTAAATTGGTAAAGCATGCTGAGTGGGATGGATCTCCTGGGCTGGGAGCCAAGTCAGGACTACTATCCACTCTAATTAGCCA ACACTTTACGGCGACATTCCAGAAGCCACCTCCACGTCCAGCCGATGTTAATATAAACTCTGCAGTCTATCCGGGTGGCCCTCCGGTTCCTGTTCAAGCT CCCAAACTTCTCAAATTTGTAGACACGACTGAGATGACCAGAGGACCACAAGAGAGTCCTGGTTATTGGGTTGTATCTGGAGCAAGACTTGTTGTTGAGA AGGGAAGAATCTCTCTCAGGGTTAAGTATTCTTTGTTGACTATAATATTGCCAGATGAAGAGATGTTGGATGTTCAGTAGCCCATTGTTTCCTTTTGAGT CTTGCCTTCAGAAAAACAGAGAAAAGTGTTCATTTTTAAGGAGTTGGAATAGAAAGGTACTAAGGTTGTATATTGGTTTTAGTTTTGGTAATTAAGGAGG CCATTGGTTCCGAAGTTACTTATGATCTATTTGTGAGTTGTTTTTTTAAGGGGAAAGGAACTTGGGAATCATTAAGTACATTTATGAGAGGGTTCTTAAC TCTTCCTTTCCTTTCCCTTCCAAAATCTAATTCACAAAAAAATCCCTATTGGAATTCTGCTTTTAATGTAAACCTCTACGGTTTCCACAGCACAATGACT TAATGAAAATTACTTTTAGAAATCAAATGCATTGAGAAATTATGGCATGTTTCTGAATGTTCTCATTATTCTCACTTGGTAGAGTTAGATGGTTCTTCAG CAAAGCATTTGTAATGGTGATCACGACATAGTAAGGAAAATATGGATGCGTATTATGTAAGTGGGAGCCACGCATCATCATATCAAGCTAGGCAATTGGC TACGATGATACTAAGTGTTGAACTTTTATGACCCATGTTTATGACATTAGGCTTGTCAACATGCCATCCATTACTCCTAAAGAACAAGCGTGTGTAGTTG TATATGCTATTTGTTTCCGTGTACTTGTGATCGTAAACTATTAGGGTCTGTTTGGAAGTTGGGTTTTGGAGGGGAATTGAGGAAGGGAAAGACAAAAGAT TAAGAGTCATTTTGCAAATGTATTTCATGGCTTCCAAGTCTTTTATTTCTCTTCAATCCTTCTAGCAAGATCAAATACAGTGTTAATAACAAAGTGGGTT AGGAAAGGCTATGGTGATGAGTGAGAGAGTAAGTGGTGTCTTAATTTTAGCAGAGTGATGTTGTAAGGTGTTTAACTATGGTGATTGGTAAGTGAATAAG TAAACATAATAATCCCTTTTATGGAAATGGATAGTTATTTTATTGAACTTGTTAAAGCTATGAAGTTGAGTGTTTATTTATATAATTGGAGTTGAAGTTA ATACAACAAACATCACTCTTTTCCATGTGGTATGAGAATGTTACAATTTCAAACAAAAATGGGAATCGATATCACTTATCCTCAACTTTAATATTCTTAC ACACTCACCAACTGCCACTTTTAGAGATGGAACACCCTAATATTATATTCTGTACATAATTTGTCAATATGAGATTGTTGTATTTCAATTTCAAATAATT CATATTTATTTTTATATTATATTAGATTTTTCTTTGAATTTAGATAACATGGTTAACTTTTTGTTATAGTTGATAAAAAGGGGGTTATGACTTGAAATGG TAAATAATAATTAATTAGTACATCATCGGAATAAGGTTTAGGGTTCCCGATTGCGGCCTGCGGTGGTGTTTTCTCCCTCTCACGGAATCGAAACTACTCT TTTGGTACCGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCTTATTTACATGTTCTAAAGATACATTACTTCCATCAATTCTTCACCC TAATCACCCTCTTTCACCTACGTTTCCTGTTTTCAGATTAAATCTTTCTTCTTCGCTTTTCTGTGATTTCTCTCTTTCTCACAGCTACTACTTTGTTCAT TTGGTTGTTGTAGATCACACCTGTGTTTTGATTAAAAGATGAAGCGCAAGCGTGGGCATAAGAAAGGGAAGACAAAAGGTACGACAATCGACACTAATGC AGGGTTTGAAAACAAGGAACAGAATTCCCCCTTTCATGAATTTGGTTATGATAAAGATAATAACTCCGGAATGGAAGGTCACACCCCTTCTTCCACCGGG ACTTATCACAATTACAGTCCTGCTCCTGCTCCTGCTCCTGCTCCGGCTCCGGCTGTTGGCCGCGTTAAGGTCAAGCTTAGGACGCCAAAGATGTTGGACT CTCAACCAACCTCATCTGATGCTCTCACACACAGTGATACCGACAAGAGTACCCACCAACATGCTACTGATAGATTATTAGAAGATACTGTTACTTCATT ATCAAAAAGACCTGCCAGCATCAAAATCAAGTCATCTAAGATCAATGCTGACCTCACTGGAACACCTTTCTCACCTTGCTCACAGATTTCACACCAAAAA CAAACAACCCATCCTCGATACAATAAGCAAGAATTGGATGCTTCCTTACTGATTATAAGGAAGGTAATGAAAATGGATGCTGCTGAACCCTTCAATGTTC CTGTTAATCCTGAAGCTCTAGGAATTCCTGACTATTTCAATATCATAGACACACCAATGGATTTTGGAACTATATGCAGAAGACTTGAAAATAATGAGAA GTATATGAATTCGGAGGATGTCTTCAAGGATGTTCAATATATTTGGGACAACTGTTATAAGTACAACAATAAGGGTGACTACATCTTGGATCTTATGAGG CGAGTAAAGAAGAATTTTATGAAGTACTGGGCTTCAGTTGGATTATACACTGAACCATCAAAAGGGACCAAGGAGAGGACTACATCAGATGATATTGCAC AGTCTGGCGATGGAA BLAST |
Tissue | pods |
Gene name | LI_gene_143494; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_320098
Blastp | MACPF domain-containing protein At4g24290 from Arabidopsis with 71.88% of identity |
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Blastx | MACPF domain-containing protein At4g24290 from Arabidopsis with 71.88% of identity |
Eggnog | MAC/Perforin domain(ENOG410Y9MJ) |
Kegg | Link to kegg annotations (AT4G24290) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019440405.1) |
Pfam | MAC/Perforin domain (PF01823.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |