| Id Trinity | TRINITY_DN46309_c5_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_366130 |
| Sequence | TGACTTTTTTGGCTTCCCTTTCTCATTTTCCTATTTTTGAAAATCTCATTATTGCTTTCTCATTCATCAAAACTACTTTCATTAGTTATATGTATCTTCC AAGCAACAAAAACAAAACTTGTCTTTTGTTCTCAATAACGTGTCCACCATTCTCACTTCATTCCTTCCTTCATTCCCCTTTCTTCTTCCTTCTCCTCAAC TCTTCAAACAAAACACATATTTATTCTTTCTTCATTTTTAAACACTGAAACCCAAACCCATAACCCTTTCTTCTCTCTCTCTTTCTATAACCATGCAAGT TTCATATTCCTCAATGAACTCATGGCTCAAAACACGTGTTCCATTGGAACCATGTTCTACTACTTCCACAACGTTATTTACACCTATCTCGTACTCAACA TGTATTAATGTTTTACATTCACCCCAGTATAAGAATAATAACTGTGTTTCGTTTCTGGTATCTCAAAGAAAAGGTTTTACTACTTTGACCCCAGTTTCAC CGATGAAAAAAATGAGCCGAAAAAGAAGATTTTTCACTGTTTCTGCATTATTTGAACGGTTCACGGAAAGAGCAATTAAAGCAATCATGTTTTCTCAAAG GGAAGCGAAATCTCTTGGTAGTGATTTGGTTTATACGCAGCATCTTTTGTTGGGTCTTATATCTGAAGAAGATCGTTCACTTGATGGTTTTCTTTCATCT GGTGTTACTATTGATAAGGCACGTGATGCTGTTCGTAGCATTTGGCACCAAAATGATAATTCGACAAGTGGTGATGGTGATGGTGATGATGATGGTCGAA GAAGTTATGTTTCTGCATCACATATTCCGTTTTCGATTAGCTCGAAGCGCGTGTTTGAGGCTGCTGTGGAGTATTCTAAGTCTCTGGGGCATAAGTTTAT TGCCCCAGAGCATATTTTAGTTGCTTTAGTCAAAGTTGATGATGGAAGTGCAACCCGAGTTCTTTACAGATTAGGGACAAATGCAAGTCAGTTGGCAGTT GTGGCATTCTCCAGACTACAAAAGGAGATTGCTAAAGATGGTAGAGAACCGAATATGGTGTCCAATGGGGTGCATAACAAATCCGTTTCAAGAAAAGGTT CCGATGCAGGATCCTCTGCCACAACAAAAGAGATGAGTGCCCTGTCACAGTTCTGTGTGGATCTCACTGAACGTGCGAGCGAAGGGCTAGTCGATCCAGT CATCGGCCGAGAAGTTGAAGTTCAGAGAATTATTCAAATACTAGGCCGGAAAACAAAAAGCAATCCCATTCTTCTTGGTGAAAGTGGTGTCGGAAAAACA GCTATTGCGGAGGGGCTGGCAATTCATATTGCTCGGGCGGATATTGCTCCTTTTTTATTGACAAAGCGTATCATGTCGTTGGATGTTGCAATGTTAATGG CTGGGGCAAAAGAGAGGGGAGAACTAGAGGAACGAGTTACGAAATTAATAAAAGAGATAATAAAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCA TACACTTGTTCAATCAGGGACAAGTGGGAAAGGAAATAAGGGATCTGGCCTTGACATTTCTAATTTACTTAAACCTGCACTTGGAAGGGGTCAATTTCAG TGTATTGCATCTACCACCATAGACGAATACAGGCTTCATTTTGAAAAAGATAAGGCATTGGCACGAAGATTTCAACCTGTTTGGGTTGACGAGCCAAGTG AGGATGACGCAGTTAAGATACTTATGGGTCTACGCGAGAAATACGAGGCACATCACAAATGCAGATTTACTGAAGATGCCATAAAGGCTGCAGTTAATTT GTCATCAAGATACATATGTGATAGGTATCTACCTGATAAAGCGATTGACCTCATTGATGAAGCAGGAAGTAGAGCTCATATTGACGACTTTAAGAGGAAA AAGGAACTAGACAATTGCGTACTTTTGAAGAGCCCCACTGATTACTGGCAAGAAATTAGGGATGTCCAGGCCATGCATGAAATGGAGAGCAAACTTAAAT ACTATGGCACTTCTAGCATTGATGATACTAGTGAACTTATAGTGGACTCATATTTACCTTCTGAAGCCAATGATAACGAACCTGTAGTAGTTGGACCAGA AGATATAGCAACTGTTGCTTCCATTTGGTCAGGAATTCCTGTTCAGCAGCTCTCTGTTGATCAAAGAACTCTGCTCCTAGATCTTAATAATCAACTTCGC AAACGTGTGATTGGACAAGACGAGGCTGTTCTTGCCATTTCTCGAGCCGTGAAGAGATCACGGGTTGGCCTTAAGGATCCTGATAGACCCATAGCTGCAA TGCTATTCTGTGGCCCAACTGGGGTTGGGAAAACTGAACTTGCAAAATCTTTGGCGGCATGCTACTTCGGATCAGTAAGATTTTACACATAATATATGAT TTAGCATTAACAATTAGAAAGTGTTCTTTTTGTAAAAAATGAGGACCATTTCCCCCCTGCTTTTACATAATATGCATCTATTTGGTTGGAATGCTGATGT GAAATTAAACCCTTTAGAAATCTACTATTTTGTAATGAAAATTGAATTGGGGATAATTTTGTAGGAAAAGTTACACATTACAAGGATTTAAATATAAAAG TATAAAATAACAATACCTAGACTATTAATGATATCGGCAATATAATTCAGTTCACCTTATGGAGTAGTTTTTTTTCCTCGCTGTTAGGGTCCAATCATAA GGTATATCACATGAGTGCCACATCGGAAGGATGTGATTTTTGTATGGGTTTATACGGCCTTCTGCTCTTGAACCCTAAGGCCTAGCTTTTGTGGTATGGT TTTCAGAACGTCTATATCAATTGGTATCAGACCTTTTCCGCCGAGTCTATTGATTGCAAACACGATGGTGATGTTAGCATTGCCTATTTGCCCAAGACTA GTCGGAGAGCTAGTGCGCCACCAGCTTGTGTGGGCAAGTTGGCCGATGTTCATGACTTATTGTTATCAATGATCACCTGAACAGGAATGGAAGGACCACA TATTTCCTGTTGCTTTTCTTCTTTGTTTTTTTGGACTACAATGATTATGCTATGGTTGATGCATGCCACATTAATTGTTTATATATAGTTTTTCTTATTA TTATTACTATTTTCAGGAGGCTGCCATGATAAGATTAGACATGAGTGAATATATGGAACGGCATACCGTGAGCAAATTGATAGGATCACCCCCAGGTTAT GTTGGTTATGGAGAGGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTCACACTGTTATTGCTTGATGAAATAGAGAAAGCTCATCCGGATATAT TCAACATTCTTCTTCAATTGTTAGAAGATGGGCAGCTTACGGATTCTCAGGTTTGTGAATGCTGCTGCAAATCTTAACTTAGTAGGATTGTCAATAAGCT TCGAGATGCAAAACTTTTTCCGTGAAATTGCATTTTTTCTTCATTGCTTCTTTGCCAAGTAAAAGCGAACACTTTATGAATAAAATTATGGACTTTATAC TACCTGTGTCCTGAATTTTTCTTTTTTGATGTTTGTAAAACTGGCTCTAACAGGGTAGAAAAGTTTCATTTAAAAATGCATTGGTAGTGATGACTTCGAA TGTGGGGTCTAGTGCCATTTCGAAGGGCCGGCACAACTCCATAGGGTTCTTGATTTCAGATGACAAGTCTACATCTTATAATGGCATGAAATCAATGGTA ATGGAAGAACTGAGGACATATTTTCGCCCAGAATTGCTTAACAGAATAGATGAAGTGGTAGTGTTTAAACCTCTTGAAAAGTCACAGGTTTGTGAATTTT GGTTATAAGTTAGCTCCATGATGATAATCATCTAGAAGAGTCTTCCTCAGTATCATATTGAGCTATTTTTCTTTAGTCTATAACTTGATTTCTTCACATA AACTAATTTTTTAACTATACCAGGTAGAAGTAGAACTAATCTCTTTGCGTAGAAGTAGAACTAATCTCTTTGCAATTGATAAACTAGGTGACAATTTTTG GTACTAGTAATTCAAATTGTGGACAGCATGACATGACATGATGCGGCTGCAATATTGTGGTTGCAGGGGTCACCAACCACATCACACCATAATTGCGGTG TAACACCGAATCACAATTATGTAGCCCATTAGGCCGCAATGCAACTACATTGGATCGCATTTGGGCTGTATCATGCTACAACGCAACCACATCTGGCCGC ATCAATTTCAAAAATAATTTTTTAATCACAGAATAATTTACATTGTAACTACTTCAATCTGCATCGCAACGGCTTTAATGACTGCAATGCGCCAGTGATT CAAATTATGGACAACACATGATGCAGCTACAATATTGTGGCTATTGTGGTCATCACAACTACATCATACCGCAATTGCGGTGTGACACCGAAACACAATC ATGGGCAATGCAATCGCATCAGGTTGCATTTAGGCTGCATCGTGCCACAACACAACCACATCTGGCCACATTAGACCGCATTGATTTCAAAAATAATTTT TTTAATCGCAGAATAATTTACACTGTAACATTGCAATATGCATTGCAAAGACCATAATGATTGCAATGCAATAACCGTGACCGTAATTACCACCGCAACT GTAATTTAAAACACTGGTAGATAAATTAATGTGTTTTATTCATTCATTGATTTTGTTACTTTTATTACAGTTGCTCCAAATATTGGATATGCTGCTTCAA GACCTAAAGAAAAGGGTCATGACCCTAGGAATTGATTTAAAGGTGTCAGAATCAGTTAAGAACCTTGTATGCCAACAAGGTTATAACCCAACATATGGTG CCAGGCCTTTAAGGAGGGCTATTACATCAATAATTGAAGACCCCTTGAGTGAAGCATTCTTAGTTGGAAAGTGCAAGCAAGGTGACACTGTCTTCATTGA TTTGGATTCCAATGGTAACACCATTGTTACAAATAATATTGATCAGATTGTGAACTTATCTGATACAAATCATCCATGTAATTAACAATTGTATAGAAGT AGTATGATAGGTATACATATATAATTACACATGTATTGAAGTTGTTTTGGCCCTTGAAGCTAGCTTAGGAAGTTTATATAATGTAATTAGCTCATCCATC ATTCTTTGAAATTTATGAAAATATATCCATATTCTCTTATCTTGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_143669; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_366130
| Blastp | Chaperone protein ClpD, chloroplastic from Arabidopsis with 67.24% of identity |
|---|---|
| Blastx | Chaperone protein ClpD, chloroplastic from Arabidopsis with 67.08% of identity |
| Eggnog | ATP-dependent CLP protease ATP-binding subunit(COG0542) |
| Kegg | Link to kegg annotations (AT5G51070) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429737.1) |
| Pfam | Clp amino terminal domain, pathogenicity island component (PF02861.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |