| Id Trinity | TRINITY_DN46317_c3_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_365148 |
| Sequence | CCAACATTAATTTGACCATGAATTAATCATTGCTAAAATATTCTCCAATTTATTTCTTTCTATATTCATTTCATGATTTCAACAAAGTTTAGTTTTATAT GAATCAAAATCTTCAAATTGAATAAGCTGATTTTTGACCCGGATCGTGACGGGTGAGTTTAAACGGGTCGAAGCTTACCCATAGAGTGAGTTTACTCATC AAGTTTTTCTCTTCTCCCATTTCTGCAGCCATAACAAAGAAACATAACAATGAGTGATATTCGAAAGTGGTTCATGAAGTCTCATGCCAAGGTCAATGAC AGTGCTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCTCAGAAAACGGCGCCTGGAGCCGAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAAT ATTTTGATAAAGACAAAGAAAAGGTGAAAGAAGAGAAAGAAACACCGAAGCTCCCTGCTAAAAGAAAGAATGTGAAAGACAGCGAGGAATTACAGATACC CCGCCCTTCAAAGAAAATTCATGAAGCGGATGAAGACAAGTCTGCCATGCCCACATCTTATAACAAGCTTGCTGACTCCACTCCTGCAAAAAAATTAAAG AGTGGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGAGTTGGAAGAAAATGATGAAGACGACGACAAAGATAATGTTACTCCAGCTAAATCTGGTGGTA GGGGTCGGGGTGGACGAGGGGCATCAACACCATCAACTGGTGGTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCC TCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTACCTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAA GAAGCCGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACAGGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGA AGTCTGAAAAAGCCAAAGAGCTTGGGACTTCCTTCCTCACAGAGGATGGATTGTTTGATATAATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGA AGAACCCAAGAAACCTCTGGCTAAGGCTGTTGCATTAGCATCCCAATCAAAAGGTCCTCCAAGAGTAGAAGCTAAGGTCTCTCTATCTTTGTCCTCGCCT TCTACCCAAGCCAAGCCAAAGACAGCAACTATTACTCAATCTTCTTCGACGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATC AGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGCATGGAATGAACAATTCCTCGACACTGGTAGTAAAAAAGTAGGTAAAAAGCAAACTGGATCTGG TTCCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTA AATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGTCCC TTGGTGCTAATATGGATCGGTCAAAGCTTTCTAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCT TATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAAAAACTAAAAAGTCTTGTGAACTACTGTTTGCTTCTT AGTTATCGAAAACCTACAAAGCAACAGGTATTTCTGTGCTTATCATTTACGAAAGAAATCATTTATCGTTTATGTAAAAGTTAAATCTTTATTCCAATTG ACTCTTTTTCTGATAAAAGAGATTTTTCATTGCTTGCTTTTAATCCAGATCATTATTGATTTTGAATTTATGGTTTTGATTAATTGGACTTGCTGATTTC TCGAATGTCATTAGCTCGAATGTGAACCTCCACATTGTCTAATTTTTGATATTGGTGTTCCAGCTCCTACTTCATTGTGTGGCCCGCTTCACTAAATCTT GAATATTTTGAGGTTGCAAAGTATCTTGACTTTGGAATAGGGTCTTATTTTGAACGGTCTAGTCTATAAATTACTTCTAGTTTTGAAGGCAAGGTTAATT AATTCAAGTTATTTTCTGTCAAAATTCATGATTTGATTTGTTTTGACTGGGTTTTCTTCTATGATCAGTTAGTTTTGATTGTTAAAGTAATAAAATCAAA TACACGAGAAAGTATGAACACATGTTTATCTGTCTATCTATGTATATGATCATCACCATTTATGAATCTTGTTCGTAGGAGAGAGTATATACCATGAGGG TCGAGGTGGTCAATAGCACACTATAGCAGTTCGTGGTGTCATGACACATGGTCGTTTTGGCTGTTGCCTAATTGCAGCCTAATAGCATGCTTCACAAACA CAATCGCTATGTGTGAATTCCCAATTTTGAAGTATTTTATTTTATATTTTACATTCATAGCTCTTTTTAGAGGGTGAGCTTGACACAATGGTGAAGTTTC TGCTTAGTGACCATGAGGTCACTGATTTAAATTCTGGAAACAACCTCTCCACTTGTGGGGGTAAGGTTGTGTACATCTACCCTCCCCAAATCCCACTAAA TGGGAGCCTCATGTAATGGGCTGTCCTTTTATGGCTCTTTTCAATCTTTAAGAACTTTAAGAGTTAGAAATCCTTCTCTCTTTGACAGCCGACACACTCC AACACCTTGTTCCATTGATAAATCTCAGAACATCTAATGTTTCACACGTGGGTCAATTTTTTTTAATGATAAAAGAGAGATTACAAGAAGTGGACTAGAC ATCCTCACATAAAGAACACCGAAAAACTAAACAACAAGGCCATACAACAACGCATGCCAGTCCCTCGGCACATCTACCAAAGAGGCACCACTAAAAAGGC CATGTGTAAAGCACAAATGGGATGACAAAAAGGTCACCCTATCCCAGACGAATCAAGAGATGAGAATGAAACATTGAAAACTCTACTGTTTTTCCTTTCC AACTAAATAAACCAAAGGACATAAAAACCATAACACTCCCATAGAATTTCGGCATCTTTACGTGTGCCAAAACCTCTAAATTTTGCAAGAGAAAAGCATG CAAGTCCATTAGGCAGATCCATGACTCATCAAAAATCCCAGACAATCTATTTCAAAGGACATTTGCCGCCGAAGAATGTAAAAAGATATGAGGCCCATTT TCGAAGTCTGAACCACACATTATGCACATATTAGGAGACAAAGTGGTTAGCACTTTAAACTTCTGAAGCATGCAATTGGTGTTAATCCTGTCAAGAACAT GTCATTGCATCTACTATGTCCAGTACAGCTGCAGAGTTTTTAGAGTTGGCTGCTCCACGCCACTATCGTATGGCAAAGAGGCTGATGGATGTTGCAAAGG CTGAGGGGCTTCAAGTTAATGAGGTGAGTACATGATGTTATTACATAGTTCTTTCTGGAATTTTAACTGTAAATATTGTCTGGGCTCTGGACCGAGGATA GCGAACTACTTTGAATCATTGATACCTGTTTCTTACAAAACTGTAATTTTTTCCATTCATATTGACCAACCTCTTTTATTTAACCACTCATCTTGATTGT TTAAGATTGCTCTTGAGGAACTCGCAGAAAGAGTTAATGGAGATATGCGCATGGCAATAAATCAGTTGCAATATATGAGCCTCTCCATGTCAGTTATTAA CTTTGATGATATCAGGCAGCGCTTTCTTAAAAATTCAAAGGATGAAGATATTTCGCCATTTACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAA TTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGATCTTGTTCCTCTTCTTATCCAGGTTTTTAATTAATTTCCTTCTTGTAATTACTGTA TGTTTGGAATTTTTATCTCGCAAGACAAATAGTATGGTGAAACCAGTACGTGTCTCATTAAATCACACATCACCTACTTCCCTGTCTTGATAATGGTTTA AGTACTTGTTGGGCTACACCTGACACCTCTCATTTCGAATTGATTGAGATGGAACCTTGACATGGTATCAAAGCTAGACCCAACTCCCTTCCATTGTCGT GTACTAAAAGATGCCCTTTAGTCATTGATCAAAGGTAACCATTTGCCTGATCTAACATGCCACGTTGGAAACTAAGTCCATATCGCTTACCTCCTTGTCT TAGTAATGGTTTAGATACCTGTTGAACTACTCTTTTCATAGCTAATAGGTTTTGGGATGGATCCTTGACATGGTATCAAATGTTGGGAAGTAAGTCGCAT ATCTCTGTCTTGTAATGGTTAAGTACCTATTGAGTTAATCCTCCTCTCATAGCCAATTGGTTTTGAGATGGACATGACAACATATTTTTAGAGAGATGTC AGTGCTTCATAGATTAAAACACCATTCAATTTTGATGGACCAAGTTTGGCTTCAACTTCAATAAAAAAAATTAGTGATTTATGTGTATATTAACCATTTA ATTGGTTAATGAAAATCACTAATTTACTTATTGCTGTATAGCAGATAGCCGTATATGATTGTTTTAATGTGTTAATGGTGCAAACTTGATAAAAAAGGGA GGGCCATTGCACGAGGCTCCCAATGGTGCAAAGTTGATGAGGATTTAAAATATTCATCATTTTTTGCATACTACCGATGGCAGGAAAATTATATTAATTA TAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_143740; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_365148
| Blastp | Replication factor C subunit 1 from Arabidopsis with 66.18% of identity |
|---|---|
| Blastx | Replication factor C subunit 1 from Arabidopsis with 65.99% of identity |
| Eggnog | replication factor c(COG5275) |
| Kegg | Link to kegg annotations (AT5G22010) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413096.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |