Ll_transcript_365171

• Id Trinity: TRINITY_DN46317_c3_g1_i20
• Name Transcript: Ll_transcript_365171
• Sequence: CCAACATTAATTTGACCATGAATTAATCATTGCTAAAATATTCTCCAATTTATTTCTTTCTATATTCATTTCATGATTTCAACAAAGTTTAGTTTTATAT GAATCAAAATCTTCAAATTGAATAAGCTGATTTTTGACCCGGATCGTGACGGGTGAGTTTAAACGGGTCGAAGCTTACCCATAGAGTGAGTTTACTCATC AAGTTTTTCTCTTCTCCCATTTCTGCAGCCATAACAAAGAAACATAACAATGAGTGATATTCGAAAGTGGTTCATGAAGTCTCATGCCAAGGTCAATGAC AGTGCTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCTCAGAAAACGGCGCCTGGAGCCGAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAAT ATTTTGATAAAGACAAAGAAAAGGTGAAAGAAGAGAAAGAAACACCGAAGCTCCCTGCTAAAAGAAAGAATGTGAAAGACAGCGAGGAATTACAGATACC CCGCCCTTCAAAGAAAATTCATGAAGCGGATGAAGACAAGTCTGCCATGCCCACATCTTATAACAAGCTTGCTGACTCCACTCCTGCAAAAAAATTAAAG AGTGGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGAGTTGGAAGAAAATGATGAAGACGACGACAAAGATAATGTTACTCCAGCTAAATCTGGTGGTA GGGGTCGGGGTGGACGAGGGGCATCAACACCATCAACTGGTGGTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCC TCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTACCTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAA GAAGCCGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACAGGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGA AGTCTGAAAAAGCCAAAGAGCTTGGGACTTCCTTCCTCACAGAGGATGGATTGTTTGATATAATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGA AGAACCCAAGAAACCTCTGGCTAAGGCTGTTGCATTAGCATCCCAATCAAAAGGTCCTCCAAGAGTAGAAGCTAAGGTCTCTCTATCTTTGTCCTCGCCT TCTACCCAAGCCAAGCCAAAGACAGCAACTATTACTCAATCTTCTTCGACGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATC AGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGCATGGAATGAACAATTCCTCGACACTGGTAGTAAAAAAGTAGGTAAAAAGCAAACTGGATCTGG TTCCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTA AATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGTCCC TTGGTGCTAATATGGATCGGTCAAAGCTTTCTAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCT TATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAAAAACTAAAAAGTCTTGTGAACTACTGTTTGCTTCTT AGTTATCGAAAACCTACAAAGCAACAGGAGAGAGTATATACCATGAGGGTCGAGGTGGTCAATAGCACACTATAGCAGTTCGTGGTGTCATGACACATGG TCGTTTTGGCTGTTGCCTAATTGCAGCCTAATAGCATGCTTCACAAACACAATCGCTATGTGTGAATTCCCAATTTTGAAGTATTTTATTTTATATTTTA CATTCATAGCTCTTTTTAGAGGGTGAGCTTGACACAATGGTGAAGTTTCTGCTTAGTGACCATGAGGTCACTGATTTAAATTCTGGAAACAACCTCTCCA CTTGTGGGGGTAAGGTTGTGTACATCTACCCTCCCCAAATCCCACTAAATGGGAGCCTCATGTAATGGGCTGTCCTTTTATGGCTCTTTTCAATCTTTAA GAACTTTAAGAGTTAGAAATCCTTCTCTCTTTGACAGCCGACACACTCCAACACCTTGTTCCATTGATAAATCTCAGAACATCTAATGTTTCACACGTGG GTCAATTTTTTTTAATGATAAAAGAGAGATTACAAGAAGTGGACTAGACATCCTCACATAAAGAACACCGAAAAACTAAACAACAAGGCCATACAACAAC GCATGCCAGTCCCTCGGCACATCTACCAAAGAGGCACCACTAAAAAGGCCATGTGTAAAGCACAAATGGGATGACAAAAAGGTCACCCTATCCCAGACGA ATCAAGAGATGAGAATGAAACATTGAAAACTCTACTGTTTTTCCTTTCCAACTAAATAAACCAAAGGACATAAAAACCATAACACTCCCATAGAATTTCG GCATCTTTACGTGTGCCAAAACCTCTAAATTTTGCAAGAGAAAAGCATGCAAGTCCATTAGGCAGATCCATGACTCATCAAAAATCCCAGACAATCTATT TCAAAGGACATTTGCCGCCGAAGAATGTAAAAAGATATGAGGCCCATTTTCGAAGTCTGAACCACACATTATGCACATATTAGGAGACAAAGTGGTTAGC ACTTTAAACTTCTGAAGCATGCAATTGGTGTTAATCCTGTCAAGAACATGTCATTGCATCTACTATGTCCAGTACAGCTGCAGAGTTTTTAGAGTTGGCT GCTCCACGCCACTATCGTGTATGCTAGTGTATCATAACCTTTTTAAGTTATGCTTAAATGTGGGAGCTTTGAACTCATATTTTTATGCCAGATGGCAAAG AGGCTGATGGATGTTGCAAAGGCTGAGGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTCGCAGAAAGAGTTAATGGAGATATGCGCATGGCAATAA ATCAGTTGCAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTCTTAAAAATTCAAAGGATGAAGATATTTCGCCATT TACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGATCTTGTTCCTCTTCTT ATCCAGGAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGCATGAATCTGATTGCCCATGCTGCTGAGTCTATTG CTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTTTCTCAAACTAGTTCTGTCGTATCGTGTATAATTCCTGCTTCATTACT GCATGGGCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAAGGGGTAAAAACATGAGACTT TTGGATGATCTTCATGGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGGATACTATACGCTTGGAATACCTGACTCTGCTTCTTCAACACCTGA CAGAACCACTGAAAACCCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATATTCTATCACTCAGGAAGATTTTGACACTATTGT GGAGTTATCAAAATTCAAGGGTCATCCTAATCTTCTAGACGGCATACCACCCGCCGTCAAGTCAGCCTTGACAAAAGCATATAAGGAGCAAAGCAAATAT CGGATGGTGCGAGCTGCAGATCAAGTCACTCTTCGGATGGTGCGAGGTTCAGATCGAGTCACTCTTCCTGAAATAAAGAAGGCCCCTAAGAAGCGGATTG CTGCTATTCTAGAACCAGCTGATGAAGGAATGGAACAAGGTGAAGGTGAAACCTTGGACGAGAGTGAAGATGAGAACACCTCTGACACTGAGGAGTTGGG CCCTACCGCTGGGGAGAAACTGCAGTCGGAACTTCAAAGCTTGAATTCAAAAGCCGTTCAAGTACAATTGGAGTTGAAGGGAACAGGCAATTCGAGTTCG AAGAAGCCATCTGCTGGTAAAGGAAAAGGTGCTTCTGCATCTGCACAAAAGGCTGGCCAAACATCAAAAAGAAAAAGGTGAAGGAATATGCACACTAATG GGAAGATTTGTATATGGACCTTGTTCTTCATGTAATTGATGTTAGGCATTTGTAATAATTTTTGGTTGACTTTTACTGAATTTTCCAAGGAGAGTACCGA GAAACATGGATTGGTTGTGTTTTTTTTAATGGAACATGGGTTGTACATGACGATGATCCCTGCTAATTTGGGCAACATATCTCATCGCTGATTGAGCTGC AAACTTCCCTGTGGGACATATTGCGAGCAAATTCCAAATTATCACTATCTCCACTCTTCATAACAAAGGTGTGTGTCCGTGTGAAACTATTCTAAGGTAT ATAAAACTATTCAAAGTTCTCAATAAAAAAAAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_143740;
• Additional information: details;

Expression of Ll_transcript_365171

FPKM

• PAB: 1.1
• PNAB: 4.3
• PS1: 7
• PS2: 3
• PS3: 8.9
• PW1: 5.6
• PW2: 3.5
• PW3: 3.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_365171

• Blastp: Replication factor C subunit 1 from Arabidopsis with 65.52% of identity
• Blastx: Replication factor C subunit 1 from Arabidopsis with 65.34% of identity
• Eggnog: replication factor c(COG5275)
• Kegg: Link to kegg annotations (AT5G22010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413096.1)
• Pfam: BRCA1 C Terminus (BRCT) domain (PF00533.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;