| Id Trinity | TRINITY_DN46317_c3_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_365159 |
| Sequence | CCAACATTAATTTGACCATGAATTAATCATTGCTAAAATATTCTCCAATTTATTTCTTTCTATATTCATTTCATGATTTCAACAAAGTTTAGTTTTATAT GAATCAAAATCTTCAAATTGAATAAGCTGATTTTTGACCCGGATCGTGACGGGTGAGTTTAAACGGGTCGAAGCTTACCCATAGAGTGAGTTTACTCATC AAGTTTTTCTCTTCTCCCATTTCTGCAGCCATAACAAAGAAACATAACAATGAGTGATATTCGAAAGTGGTTCATGAAGTCTCATGCCAAGGTCAATGAC AGTGCTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCTCAGAAAACGGCGCCTGGAGCCGAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAAT ATTTTGATAAAGACAAAGAAAAGGTGAAAGAAGAGAAAGAAACACCGAAGCTCCCTGCTAAAAGAAAGAATGTGAAAGACAGCGAGGAATTACAGATACC CCGCCCTTCAAAGAAAATTCATGAAGCGGATGAAGACAAGTCTGCCATGCCCACATCTTATAACAAGCTTGCTGACTCCACTCCTGCAAAAAAATTAAAG AGTGGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGAGTTGGAAGAAAATGATGAAGACGACGACAAAGATAATGTTACTCCAGCTAAATCTGGTGGTA GGGGTCGGGGTGGACGAGGGGCATCAACACCATCAACTGGTGGTCGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCC TCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTACCTGTTTAGCTGGCTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAA GAAGCCGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACAGGATCAGTCAGCAAGAAAACAGTTATGCAATGCTTTTTCTTCAACTCTAATTCAATTT ACATAATCAGCACGTGACTGACATCCTTTGTTTTCAGAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAAGCCAAAGAGCTTGGG ACTTCCTTCCTCACAGAGGATGGATTGTTTGATATAATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGAAGAACCCAAGAAACCTCTGGCTAAGG CTGTTGCATTAGCATCCCAATCAAAAGGTCCTCCAAGAGTAGAAGCTAAGGTCTCTCTATCTTTGTCCTCGCCTTCTACCCAAGCCAAGCCAAAGACAGC AACTATTACTCAATCTTCTTCGACGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGACATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAAT TGGTTGAAAGCATGGAATGAACAATTCCTCGACACTGGTAGTAAAAAAGTAGGTAAAAAGCAAACTGGATCTGGTTCCCAAAAAGCTGTCTTGTTAAGTG GAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGC TGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGTCCCTTGGTGCTAATATGGATCGGTCAAAG CTTTCTAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAA TTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAAAAACTAAAAAGTCTTGTGAACTACTGTTTGCTTCTTAGTTATCGAAAACCTACAAAGCAACA GGTATTTCTGTGCTTATCATTTACGAAAGAAATCATTTATCGTTTATGTAAAAGTTAAATCTTTATTCCAATTGACTCTTTTTCTGATAAAAGAGATTTT TCATTGCTTGCTTTTAATCCAGATCATTATTGATTTTGAATTTATGGTTTTGATTAATTGGACTTGCTGATTTCTCGAATGTCATTAGCTCGAATGTGAA CCTCCACATTGTCTAATTTTTGATATTGGTGTTCCAGCTCCTACTTCATTGTGTGGCCCGCTTCACTAAATCTTGAATATTTTGAGGTTGCAAAGTATCT TGACTTTGGAATAGGGTCTTATTTTGAACGGTCTAGTCTATAAATTACTTCTAGTTTTGAAGGCAAGGTTAATTAATTCAAGTTATTTTCTGTCAAAATT CATGATTTGATTTGTTTTGACTGGGTTTTCTTCTATGATCAGTTAGTTTTGATTGTTAAAGTAATAAAATCAAATACACGAGAAAGTATGAACACATGTT TATCTGTCTATCTATGTATATGATCATCACCATTTATGAATCTTGTTCGTAGGAGAGAGTATATACCATGAGGGTCGAGGTGGTCAATAGCACACTATAG CAGTTCGTGGTGTCATGACACATGGTCGTTTTGGCTGTTGCCTAATTGCAGCCTAATAGCATGCTTCACAAACACAATCGCTATGTGTGAATTCCCAATT TTGAAGTATTTTATTTTATATTTTACATTCATAGCTCTTTTTAGAGGGTGAGCTTGACACAATGGTGAAGTTTCTGCTTAGTGACCATGAGGTCACTGAT TTAAATTCTGGAAACAACCTCTCCACTTGTGGGGGTAAGGTTGTGTACATCTACCCTCCCCAAATCCCACTAAATGGGAGCCTCATGTAATGGGCTGTCC TTTTATGGCTCTTTTCAATCTTTAAGAACTTTAAGAGTTAGAAATCCTTCTCTCTTTGACAGCCGACACACTCCAACACCTTGTTCCATTGATAAATCTC AGAACATCTAATGTTTCACACGTGGGTCAATTTTTTTTAATGATAAAAGAGAGATTACAAGAAGTGGACTAGACATCCTCACATAAAGAACACCGAAAAA CTAAACAACAAGGCCATACAACAACGCATGCCAGTCCCTCGGCACATCTACCAAAGAGGCACCACTAAAAAGGCCATGTGTAAAGCACAAATGGGATGAC AAAAAGGTCACCCTATCCCAGACGAATCAAGAGATGAGAATGAAACATTGAAAACTCTACTGTTTTTCCTTTCCAACTAAATAAACCAAAGGACATAAAA ACCATAACACTCCCATAGAATTTCGGCATCTTTACGTGTGCCAAAACCTCTAAATTTTGCAAGAGAAAAGCATGCAAGTCCATTAGGCAGATCCATGACT CATCAAAAATCCCAGACAATCTATTTCAAAGGACATTTGCCGCCGAAGAATGTAAAAAGATATGAGGCCCATTTTCGAAGTCTGAACCACACATTATGCA CATATTAGGAGACAAAGTGGTTAGCACTTTAAACTTCTGAAGCATGCAATTGGTGTTAATCCTGTCAAGAACATGTCATTGCATCTACTATGTCCAGTAC AGCTGCAGAGTTTTTAGAGTTGGCTGCTCCACGCCACTATCGTATGGCAAAGAGGCTGATGGATGTTGCAAAGGCTGAGGGGCTTCAAGTTAATGAGGTG AGTACATGATGTTATTACATAGTTCTTTCTGGAATTTTAACTGTAAATATTGTCTGGGCTCTGGACCGAGGATAGCGAACTACTTTGAATCATTGATACC TGTTTCTTACAAAACTGTAATTTTTTCCATTCATATTGACCAACCTCTTTTATTTAACCACTCATCTTGATTGTTTAAGATTGCTCTTGAGGAACTCGCA GAAAGAGTTAATGGAGATATGCGCATGGCAATAAATCAGTTGCAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTC TTAAAAATTCAAAGGATGAAGATATTTCGCCATTTACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCT TAGCATGAGCGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGC ATGAATCTGATTGCCCATGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTTTCTCAAACTAGTT CTGTCGTATCGTGTATAATTCCTGCTTCATTACTGCATGGGCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGG GAAGAACTCGACAAGGGGTAAAAACATGAGACTTTTGGATGATCTTCATGGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGGATACTATACGC TTGGAATACCTGACTCTGCTTCTTCAACACCTGACAGAACCACTGAAAACCCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACAT ATTCTATCACTCAGGAAGATTTTGACACTATTGTGGAGTTATCAAAATTCAAGGGTCATCCTAATCTTCTAGACGGCATACCACCCGCCGTCAAGTCAGC CTTGACAAAAGCATATAAGGAGCAAAGCAAATATCGGATGGTGCGAGCTGCAGATCAAGTCACTCTTCGGATGGTGCGAGGTTCAGATCGAGTCACTCTT CCTGAAATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTAGAACCAGCTGATGAAGGAATGGAACAAGGTGAAGGTGAAACCTTGGACGAGAGTG AAGATGAGAACACCTCTGACACTGAGGAGTTGGGCCCTACCGCTGGGGAGAAACTGCAGTCGGAACTTCAAAGCTTGAATTCAAAAGCCGTTCAAGTACA ATTGGAGTTGAAGGGAACAGGCAATTCGAGTTCGAAGAAGCCATCTGCTGGTAAAGGAAAAGGTGCTTCTGCATCTGCACAAAAGGCTGGCCAAACATCA AAAAGAAAAAGGTGAAGGAATATGCACACTAATGGGAAGATTTGTATATGGACCTTGTTCTTCATGTAATTGATGTTAGGCATTTGTAATAATTTTTGGT TGACTTTTACTGAATTTTCCAAGGAGAGTACCGAGAAACATGGATTGGTTGTGTTTTTTTTAATGGAACATGGGTTGTACATGACGATGATCCCTGCTAA TTTGGGCAACATATCTCATCGCTGATTGAGCTGCAAACTTCCCTGTGGGACATATTGCGAGCAAATTCCAAATTATCACTATCTCCACTCTTCATAACAA AGGTGTGTGTCCGTGTGAAACTATTCTAAGGTATATAAAACTATTCAAAGTTCTCAATAAAAAAAAAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_143740; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_365159
| Blastp | Replication factor C subunit 1 from Arabidopsis with 64.13% of identity |
|---|---|
| Blastx | Replication factor C subunit 1 from Arabidopsis with 68.24% of identity |
| Eggnog | replication factor c(COG5275) |
| Kegg | Link to kegg annotations (AT5G22010) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413096.1) |
| Pfam | Replication factor RFC1 C terminal domain (PF08519.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |