| Id Trinity | TRINITY_DN46336_c0_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_366902 |
| Sequence | ATGGTAAACCGTGTAAATCGCAAACACAGTTAACAAAAATAAATCAATTTAACATTCAAAATTTCAAATGAAACTTTTTTGTTGGTTTGATAAAGCAACA ATTTATGTTTAAATTTTTTGGGTTCGTCGCTTTGCGTTTGGGATCTTCTCCTTAGCCTCGAAGAGAAGGAGAAGGAGAAGGAAAAGGGAGAAGAGAAGTG TTTGTGTGTGAACAAGGAAAGGGTACCCCACACAAAAACATCCCTTCTACTTTTTCCAAATACCATTCATTCCTCGCAACGCAACAACTTTCGATTCTTC TTTTCTTTCGTCAAACCCATTTGGGTTTATCTACCTTCCCTTCTCTTAATCAACTCTTTTATTTTTGACTTTTACATCATCGCTTCTTCTTCTACTTTTC CTTCTTTCCAATTACTCATTCTTTTATTTTTTATTTATTTTTAATTCCATCAATTACAAGTGTCAATGATCTAGAAATACACAGAGAAAGAGTCCATCAT TGTGTTCTGTTCCCATTTGTTTCAAACATTCTTTATTTCCCATAAAATACACAAAATTGAAATATTCAATTTATGTTGTTCTACTTGTCTATGTCTTTGT CAATTATCAGATCATAAACTTCGCAACACTGATTTTTTAACCGTTTCGTTTCTTTTGATTGGGTCCCGTTCTGTTCTCAGAAGGAGGGAGTTTGTGATCA TATAGCACTTAGAGTTATGGGTTGGCTTAGCAAAATTTTTAAAACCTCTGACCATAAGATTTCGGAAGGGCATTATCATAATAATCATTCAAACTATAAA GACGATGCGGATTCTTACACACCATCAACTTCAGGGGATGTTTGGCCCAAGAGTGAGGATGAAGATATCGATCGTGCTATTGCACTATCTCTTGTAGAAG AAAATCAGAAAGGAAACGGCGTAAATGACTACAAATCACAATTAGAAGAAGATGAACAACTTGCCCGAGCTATAGAACAAAGCCTTATTGTCGAGTCTCC ACCCAGACCCAGATATGGAAATGAAAATATGCATCAACCGGTTCCATTGTATTTCCCAATGGGGTACAGGTAGGATTTAGAGAACAAATGACATTATTGT ATGAATTTGGTGTCCTAATTCGAATATTTTTTTGTTAGACTACTTCAATGAGCATGCTAAGATTATCATCTAAATTTGTCTATTCACCATTTACCACAGG GTCAAAAATCATCCTTCTATCAGTTCTTACCTAGGCACGTGCTGCTAGTACTTGATCATCTGGATTATATATTTTGACATGTTATACCTCGTAATTGGTC ATTAACATATTTTCTTTGTATTCCCAGTTACTTTTGCTGGTCCTATTGGATCACTTGTTAACTAAAATAGTGTATTACTCATTAAGCATATTTTGGTAGG TAGGCTTTTGATGTAAGAAAACTATGAGGTTGTCTAAATACATTAATCTTCATCCTTTACCCATCTTCGAATACCTTGTATAAAGCATATTATGTTAGTT AACTCATGGGTAAGGATACTGCAATAAAACTAATTTGCAGCCAAATATTAGTTTATACATCTAGATCATCACGGAATAATCAGCAAACAGATTATCACGG GTTCCTTGAATTAAGTTCCACATTCAAATAAGGGATATAATGATATGTAGGGTTGAAAACCTGTATCACGCAGAACATAATCAATGTTCATAAACAAAAG GATAAAATTTCTATCAAGAATATTTTTGTCCGTCTTCACTTGATGGACAAATTGTTCTCTTTTTTCATTTCGCTATTATGTCATGTATCAACTATATACA TGTGATGCAGACATAATTGAACTTCTCTGGATATTTACATAATAGGGTTTGTGCTGGCTGCAATACCGAGATTGGTTATGGACGATATTTAAATTGTTTG AATACATTCTGGCATCCTGAATGTTTCCGTTGCCGTGCCTGCAACTTACCAATCTCTGATTATGAGGTCAAGAGTTTCCATTTACTTGTTACATTGCTCA TTTCATGGTTTCATAAATCTTTTTTACTCTGTACTTATGGTTTTGTTGCTTTTGCTTATATACACTTTAGTTTTCCACATCTGGCAATTACCCTTACCAT AAATCATGCTACAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTGTAAGTATTTTACCTTAAAAGATTTTATATTTTTGCTTATTATAAC CAATATGCACAGTGTTTTGTTTTCCATTTACTAAGTAATATTTAAAAATGGATGAAGAGAATGGAAAATGCTATTCAGACTAGAACCTTAAGGAAGCTAT ATCTTATATCTATGCTACATGCAAATATAGGTATGATTAATAGTGTTCACAACTTCATATGTTGTTTTCCTGTTCCTGACCTTGAAATCTTGGTGTCCTA TCAATGTGGACAAGCATGATGTATGTGAAACTTCATTTCTTCTGGGAACAATTCTTTCACAACTCACAAGATTGTTTTTAGTACATATTTCACAAGCTGT TATCTATTTCTTTCTTATGTTTTTGTGCCTGCATTTGGAGAAGCTGGGTGAATCATTTCCATTAGGAATTAGAATTATACTCATTGATGATGTGCATAAT CTATTTGATCATTGTTTCTTCTCATGATCACTTTCCCTTGTTCATATAACTTTTAGAGAGTCTGTGTTAGTTCATATCTGTGATGGTGACACATTAAGTG GGCTTTTACAAATGCTTGCTCGAAAGAACTATATTCGATCTCTGCATCTAATCACTAATCAGGGTATGGAAGATGCTATATTATCAAAGTTTGTGTCTCA TTTTCTTGGTGATGTTGTTCTCACTTCAATATGGTCGTAGCATGGTAGCAGAAGGTGCTACTGGCATCGCTTTGTTTTTTCAAATTTGTGGATGCTGTTT GAGTTATTCATGATGTTTATAACTTTTATATGTTAGAATTAAGTAAAGATACGCTAGCCAGTTTTCACCTTGACACCAGCCTTATTATCTCTTATTACCC GTTGCTGTTACTTTTTGGTTTGACAGATTCCGACAAATCATGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGATCCAGAAATATTGCCCTACCCA CGAACATGATAATACCCCACGCTGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGGCTGGATATATTGGTCTCAATGATGGTCGGAAACTCTGCTTAGAA TGTCTGGACTCTGCCATCATGGATACTAATGAATGTCAACCTCTATATGCTGATATACAAAAGTTCTATGAAAGCCTAAACATGAAACTGGACCAGCAAG TTCCACTACTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAAGGGGAGAAGAATGTAAGGGAAAATGCATCTTTAACAATTTGCGTGAAATATTA ATACCTGATCATTTGATATCAATGACGTTCAATATTGAATAGCAAATGATGTTTATGTTATTGATAGCTTTGTGAATGGTATCTCTGATTCGGTTAGAAC ATCTCTATGTTGGTAATATTTTAGCGACATGCTATGTCAAATAAATAATTCAATTTGACATGCACAATATATGAAAAGATAAAAAAGAAAAGAAGCAACT GCATTTGTGTTTGTTTGGAAGTCTAACACTTGCAATAAAAAATTCTGTCCAAGTTCATATACCTTCAGAAAGCCTCAACTCATAATTAATTCACGACAGA AGCAAGTGCTTTTCTTTTTTCTTATTTGACTGTTTATCTTGGCCAGGGCCACTATCACATGCCTGAGACCAGAGGATTGTGCCTTTCAGAGGAACAAACT ATCAGCTCGATTTCGAGACGGCCTAGACTTGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_143843; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_366902
| Blastp | Protein DA1 from Arabidopsis with 40.48% of identity |
|---|---|
| Blastx | Protein DA1 from Arabidopsis with 79.83% of identity |
| Eggnog | PDZ and LIM domain(ENOG410XRD4) |
| Kegg | Link to kegg annotations (AT1G19270) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458702.1) |
| Pfam | Ubiquitin interaction motif (PF02809.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |