Id Trinity | TRINITY_DN46374_c0_g1_i10 |
---|---|
Name Transcript | Ll_transcript_366444 |
Sequence | TACGAAGGCTGCTCACCCTGAAGCATTTGGAATTGCAGAATGAATTATCATGCATTTCCATCCCTAGACAAAAAAATGTGCAAAAACAAACACATTCACC CATTCCAGCAAATAATAGCTGCATCTCCTCCTTTTTGAGTGGAGTGGACAACAATAAGACATTTATTATTGGCACACATAAGCCTTCTGTGGAAATTTGG TCTTTTGCATCTGACAGAGTTACTGTAGTTGCTCGTGGGACAATTTCATTAACAAATACTATGGGAACTGCTATAACTGGGTGTGTACCCCAAGATGTGC GTCTTGTATTTGTTGACAAGTATTATGTTCTAGCTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGCAGAACCATCTCCTTCATCACCACT AAATGTGGTGGATACTGCTTCATCTTCTATAAACTTGGTAAATTCTGTGACTAATGTTTTTGACAAGAGGAGTGACCTTCCTTCCACTCTTCAATTGATT GCCATTCGTCGCATCGGCATTACTCCAGTTTTCTTGGTGCCCCTGGGTGACACACTTGATGCTGATATAATTGCTCTGAGTGATAGACCTTGGTTGTTGC ATACTGCAAGACACAGCCTTTCCTATACTTCTATCTCATTTCAGCCATCCACACATGTGACTCCTGTTAGCTCTGTTGATTGTCCAAAAGGAATATTATT TGTTGCAGAGAACAGTTTGCATCTGGTGGAGATGGTGCAGAGCAAGAGACTTAATGTTCAGAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCCTGTAT CACAATGAAAGCCGGATGTTGCTTGTGATGAGGACAGAACTCAATTGTGGTACATGTTTGTCTGACATATGTTGTGTGGATCCCTTAAGTGGGTCAGTAC TGTCATCTTTTAGACTTGAACTTGGAGAAACAGGGAAATCCATGGAATTAATAAGAGTTGGAAGTGAGCAGGTGCTTGTAGTTGGAACTAGTCTGTCTTC TGGTCCAGCCATAATGCCCAATGGTGAAGCTGAGAGTGCCAAGGGTCGTCTTCTTGTTCTCTGCCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATG ACATTCTGTTCAAAAGCTGGGTCATCATCTCAAAGGACTTCACCATTCCATGAAATTGTTGCATATGCTCCTGAGCAGCTTTCAAGCAGCAGTCTTGGCA GCAGCCCTGATGACAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTATGGCAGTTTCGATTGGTTTATGCAACTACATGGCAGGGAATGGTACT TGCAATCTGTCCTTATACTGATCATTACTTCTTGGCATCTGCTGGCAATGCCTTCTATTTATGTGGTTTCCCAAGTGACCATCCCCTAAGAGTTAGAAGG TATGCTGTGGGAAGGACACGCTTCATGGTAACATCTTTGACTACAGATTCTACTAGAATTGCAGTTGGTGATTGCCGTGATGGTATCCTTTTCTATTATT ACCATGAGGAAGCAAGAAAGTTTGAGCAACTTTACTGTGACCCGTCACAGAGGTTAGTTGCTGATTGCATTCTTATGGATACTGAAACAGCAGTTGTTTC AGATCGCAAAGGAAGTATTGCTGTTTTATGTACAGAATATTTGGAAGGTAAACCTGAACTAAGTCTTTTGTCTAATCAGGTTCTTGCCAGCCACTTTTTA ATTCCGGGGTTACTGCTTGTGTTTGGAATTTTATTTTCTCTGGTACCAGGATTTTCAAAATTTGAACTATTTGCTTTTATGACAACCAAAACATTCATTG GTGTACTTTGAAATCTGTTAAGAAACATGCCTGTTCATGTTATGCAAATGGACCTTCCCAGTCAGTGGTGGAGTAAATACGTCTCTGTAGTTTATGTTAT GAGAATGGACCTTCGTGGTCACTGGTGTAGTTTGTATATTGTTTCTAGCTTTTTCTACAGCTTGGTGTTAACCTCTTTTCATATTGTGAGTGGACTGCAG TTTTTCTCATAATGGAAGGTCTTTATACTTTATTAGGATGCAATATATTATGACCCGTGTTTCATATTACAACCGTGTTGGTTATAGAATGTTATTTTCA TGCTTAAAGGTTAAAGCTAGTTGCTTATTGATTTCTCACTCACCCTGGTTATTCCTCTGCCTCAGACAGTGCAAGTCATGAAAGCAACTTGATACTAAGC TGTGGTTATTTCATGGCTGAGGTAGCCATGAGCATCCAAAAGGTATATACTTTAAACATCCTGGGAGAACAGTTATTAATTTGCATTAGAAATCATGTCA TAATTTTTTGTAGAATTTTGATTTGAAGCGGGCAGCTTACAGATGAAGTGTGCTGTAATCAATTGCCATAATGACGCAAGTTACTCTGCGAACGAGATGG TATTTATATAGCATGAAATACTACCCCACAAAAAGACCCAGTATAATCCTAAAATACCCCCTGCGGAAAAACCCAACCCAAAACCCCCCTCCATATCCTC CATGCACCTCCGTCACCATGGTGGCTCATAAACCCCAAATGTTGGCCTCCATCATAAAATGACATAAATTGGATGGTGAAATGGTGTTCCGTCTAAAATC CATCACCGCATTCTGCCATGGCCAGACTTTTGACAACACTGCCTAAGAGGGAAGAAGCTAACAAATATTTTTAAAAGAATAAGGGTCCTGTAAAAAGCTC TAAACTATACAGACCTACTTGAAAATTCAGTGAAGCTGTAGGTATCTATTTGAAAATTCAGTGAAACTAAAGGGACAGCCCAAGTATTTTATCCTGTAAC TTTGCAATGTCTTGCGCCTCTTCTTTCTATTCCCTTCACTTGTGTGTTTTAACACGTAGATTTTTTTGTTGGTTAGTGTCATTTATGTTTTTTTTTATCT ATTATTATTTCAGGGCTCATATTCATACAGATTTCCAGCTGATGATGTTTTGCAAGGTGGCAATACTCCCAAGACAAATGTTGACTCAATGATAAATACT GAAAATACTATTATTGCTAGTACTCTGTTAGGAAGCATAATCATCTTCACCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAGGCGGTGCAAGCAAGAC TTGTTGCCCATCATCTGACAGCACCTGTTCTTGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCAGTTGGAGTGCCCAAGATACTCGATGGTGA CATGTTGACCCAGTTTTTGGAGCTAACAAATATCCAGCAACAGATGATTTTGTCTTCTTCAGAGCCACCGAAAACGGTAAAACCAACCTCAAAACCATTC CTACCTCCTCATATTTCGGTCAGCCAGGTAGTTCAACTTCTTGAAAGAGTTCATTATGCACTGAACTAGATACACATTTTGTTCCTCAATCCCCTTTTTT AAACAATGGTATATGGAGAGTGAGATAGCCATAATGGAAAATGAACAACCAGCTACAACAACATGTGAGGACAAATGATCCAAACATTAATTGTCCAAAG CTAACAATCACACATGGGAAGAAGCTTCACAGTCATGGTAAATGTAATTCCAATCTAATGCTGTTTGTTAGTCTTGGATAACAAAGTTGAACTCTTCTTC TGAAACAGATAGTTTCTTGTCTCTGTATTTGTTGTAGTATTCAGAAATTACTATACGGTAGGAAAAGGGCTTTTGGCACAATAAACTGTACAATAGTGAA ATTAGTGAGAGGTTCATTCTTTTTTTAAATAAAAAAAAATAGTAACTATAGTGTATATTCAATAAATATAATATTTTTGTGTGATCTTTTGACCTCTTGA TGCTTTTTTCTTAC BLAST |
Tissue | pods |
Gene name | LI_gene_144192; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_366444
Blastp | Pre-mRNA-splicing factor prp12 from Schizosaccharomyces with 22.62% of identity |
---|---|
Blastx | Splicing factor 3B subunit 3 from Mus with 28.21% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (SPAPJ698.03c) |
CantataDB | Link to cantataDB annotations (CNT0000034) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019444143.1) |
Pfam | CPSF A subunit region (PF03178.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |