| Id Trinity | TRINITY_DN46382_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_365953 |
| Sequence | CTTACTTTCTCTTATAGCAACCTAGTAATTGGTTATTGCTTCAATTACATTTGAATTTTGAACTGTGTTTGGTGTTGTTGTAGTGAATTAACTGTTAGGA GATGTAGCTTGTGGGGTTTAAGCTATAAGCGGTATTAATTGGACTTCTGCTGAAATGGGTTTGGTTTTGTTATTGGGCTGATTGACACATGGCACATAAA GCAATGACATCTTCTCATGGTAACGCACACTCGGAAGGTGCGGAGATGGAACAGATAATCACTGAATTTTTCGCTAAAAGTATTCACATAATACTCGAAT CCAGAGCACTCTATGCGTCCTCACGTAATTCCTTTGGCGATCAAGTTGTGTCATCTCCATCTTCGTCGTCTTCATCCTCATCCAGCGTGCGCCCGAGGGA TAAGTGGTTCAATTTGGCACTCCGGGAATGCCCTGCAGCATTGGAGAACATGGACCTGTGGCGCCAAAGTAATCTTGAGCCGATTGTGATTGATGTGGTT TTGGTGCAGAGGCCTGTGAACTGGGACCCTACGAGTTGCCCCCTGAAAAAGGTTCTTCCTAGGAGTTCTTCAATGAAGGAAAGATACCCATTTTCCTGGA ATAGTGATCAAGAAGAATTGGGAATTGAAACAAAGAGTGATAAGATTATAGAGAGATGGGTGTTGCAGTATGAGAGTGGAAAAACAAGAGATTCTAATTC CAACAGTAGGAGGTCAAGCAACATTTCTTTGCATACTTTGTATAAGAAATCTACTTTACTTTTGAGGTCTTTGTATTCCACTGTTAGACTTTTACCTGCC CATAAAACTTTCAGAGAGCTTAATTCATCTGCGCAGATTCATCCATTCACCCTTGTGCACCGCATATCTTCTTTCATTGAGCCCTTCACCCGTAGAGAAG AGGCAGAAATGCTGAAATTTGGGTTCACCCCTGTGGATACTGCGTCCGGTAGGCTCTGCCTTTCAGTGATGTATTTACCATCAGCCTCAGAAGTGAGCTC TGAACCGACAACTCCTATGTCCCCACAAGTTATAACTGACTATGTCGGGAGTCCTTTGGCTGATCCTTTGAGGAGATATCCATTGATTCCGGTGACAGGA TTACCATCATATGGGTCTCCATCGTCATTGCCCTTTTCAAGGCGACATAGTTGGAGTTATGACCATTTTAGAGCTTCTTCTCCTTCCATTGCTTGTTCGC CTTCACCTACATATTCAGAATCACACACATCAGTGTCTATTGCAAATTATCGGCATTTTCCACCTGCAAGTTTGCCTCCTCAACCAACTGAGTTATCATT GATTCAGAAGAGGAATACAGGTTTTGATGATCGTTATCCCCATCCATCACACTCAATAGACAATTTTGGGTCATTACCAACTAAAACAATTTTACGAACT GAAAGTGCTCCAGTCAGGATACCTGCTTCTGAAGTTACTAATTCCCCTGATACAAATATGAGCATGCAAACAGGTGCAACAGCTGAGAAGTTGTTTTCTC TTGGAAAAGATGAGCCGCGAAAATATTCTGGAGTGAAGATATCAGCTAACAGCTCGCCGCATATTTCATTTTCCAGAAGCTCCAGTAGATCTTATCAGGA TGATTTTGATGATTCTGATTTTACTTGTCCTTTTAATGAAGATGATTTGACAGATCCAGAAACAAGAGCGGAATCTTTTGATCATGGACATATGGCTGAT GCGCTCGAAGCCGGAGGATTCTTTCCTATCAGAAAGTCCCATGATGCTGCTGTTGGTACGCTTGTACATTTGCTGAAGAAAGCACCACCTCTCCGTCAAG ATCTCTCCACTTCCGAGCACTTGTCACAAGGCGCACACTCTGAAATCTGGAACAACAACATTAAAGAGCCCAACCAGACCCCAGATGCTCCAATGCCAGT GAGCATGATGTCTTCAGGTCTCATAGCCACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATAGTTACAGAGAGATGAAAAACTTATTGCTTACT GGAGGTAGGAAGAACCAGATATAATATACTTTTGCTTCTGTGAATGAGGTTCATGTTGATGTTAAATCAGCAAAATGCATGTACAGCTTTTTTACTTGAT AACTCTTTCTTTGTATTGAAAATATGTGTAAATATGATGATCAAGCAAACCTTAGTCCGACTAGTCCGACTAGGTGGGGTCAACTGCATAAATTGAGCCG ATATGAGCTTTTGGCACACTACAACTTTATGTTTGTAAAATACATGAAGCTGGTGATCAAATCTGAGCCATTTGGCACACTACAATCTTATATTGTGTAA AATACATGAAACTGTATAATAACGACCACCCTTTCTCTTTCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_144248; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_365953
| Blastp | Autophagy-related protein 13b from Arabidopsis with 52.65% of identity |
|---|---|
| Blastx | Autophagy-related protein 13b from Arabidopsis with 51.04% of identity |
| Eggnog | Activates the ATG1 kinase in a nutritional condition dependent manner through the TOR pathway, leading to autophagy. Also invoved in cytoplasm to vacuole transport (Cvt) and more specifically in Cvt vesicle formation. Seems to play a role in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage during stationary phase (By similarity)(ENOG410Y4BP) |
| Kegg | Link to kegg annotations (AT3G18770) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462868.1) |
| Pfam | Autophagy-related protein 13 (PF10033.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |