Ll_transcript_365955

• Id Trinity: TRINITY_DN46382_c0_g1_i2
• Name Transcript: Ll_transcript_365955
• Sequence: GACAGATCCAGAAACAAGGTACTCTGCGACAGAAATTCACTACGATTTATGCTTCCTTTTACACTTATTTTGCGCATAAGATATCTGTTTTATCAAGTAA TTGATGCTTCCTATGGCGATGCTTGGATTCTTAAAGATAATAGTATGCATAACTTCTACCATGTTCTATCCTACTTGCATGGAAGGGAGGTCATGCTTTT GGTCTGGGATAGTCTCGGGTAACAAACTTGCAAATTCTTGGTGGATTAGATATCAAATTATATGGCTAACAATCTATCAAGGAATCCCTGTGTTATATGA GATATAATGCTCTACTAATTATGGGTTCATAAATTGTTTTCCGTTGACCTAAAAGGATAAAAGCTGACTAAACTGGTAAATCAAAAGTAAAATAAGAAAC ACATTTATTCATTTTTAATTTCATTAATTCTGTCTCCAATGAAGTTTTTGACATGTACAATCAACACAGTGTGTTAATCACTCATCTCCCTCCTTTTTTG CCTAGAGATTGACATCTAGAGTAATCGGAATACACCACTGTGGTGAAACATTGCATTTTCTTTTCTTCAGACAATGTTTAGGTTTGTACTACCGGTTCTT GAAATTGTATAAATGTTTATGATTTATATACCAATGGCAATGTTGTTGAACTGATTTAGATGCACTATTCTGTTATTTATTTAACCAATGTTTGAAAGTT TCTTTTATTGGTGTGTATTGTGTAACGCTATATTTCCCAAAGTAAGAAATCCAATCAATGTGGCATGTTTTATGTTAATGTTGTCTTTTTATGTTATATT TTATCGATTCTGCCTTTTCTTCTTTAATTGTGTCTTATGGTCCTATCACGTAAACAATCAACATTGATCTAGTTTACTATTTCACCCACCTGTCCTGTTC TCCCTTCTACCAATTCTTTGGCTGGCAAAAAACATATTATTTGTGTCGATTTTTTGATAAAGAACACTGTTTGTTGGATTTTTTGTGTGGAGCATTCTTG TAAATCTGTGAACTGTTTTCTCATGCAATCAGATTTGAATTTTGACAATAAAGAAATGACCTGAATTCAAATACAAATCATGTGGCACTGGCAGACATGT TATTCATCTTAATTTTCATTTTGAATAGTTGTTATTCCATCAAGATAGGGGTGTCCATTCAAGTTTGAGACGCGGTTCACTCTCATACTTGTGCAGATTA CATTTCTCTGTCACTTGTGACTTCTGTAGAGCCAAATTTTAGAATCGAAATATAATCTATATTTTGGTAGATTTTGTTTGACTATGATGACATAAACTTC GCTAAATTGTCTTTTATCAAGCAATTCTAACACAATTCGTCCCTCATAACCAGAGCGGAATCTTTTGATCATGGACATATGGCTGATGCGCTCGAAGCCG GAGGATTCTTTCCTATCAGAAAGTCCCATGATGCTGCTGTTGGTACGCTTGTACATTTGCTGAAGAAAGCACCACCTCTCCGTCAAGATCTCTCCACTTC CGAGCACTTGTCACAAGGCGCACACTCTGAAATCTGGAACAACAACATTAAAGAGCCCAACCAGACCCCAGATGCTCCAATGCCAGTGAGCATGATGTCT TCAGGTCTCATAGCCACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATAGTTACAGAGAGATGAAAAACTTATTGCTTACTGGAGGTAGGAAGA ACCAGATATAATATACTTTTGCTTCTGTGAATGAGGTTCATGTTGATGTTAAATCAGCAAAATGCATGTACAGCTTTTTTACTTGATAACTCTTTCTTTG TATTGAAAATATGTGTAAATATGATGATCAAGCAAACCTTAGTCCGACTAGTCCGACTAGGTGGGGTCAACTGCATAAATTGAGCCGATATGAGCTTTTG GCACACTACAACTTTATGTTTGTAAAATACATGAAGCTGGTGATCAAATCTGAGCCATTTGGCACACTACAATCTTATATTGTGTAAAATACATGAAACT GTATAATAACGACCACCCTTTCTCTTTCAAAA
• Tissue: pods
• Gene name: LI_gene_144248;
• Additional information: details;

Expression of Ll_transcript_365955

FPKM

• PAB: 0.3
• PNAB: 0.6
• PS1: 0.4
• PS2: 0.4
• PS3: 0.7
• PW1: 0.4
• PW2: 0.7
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_365955

• Blastp: Autophagy-related protein 13b from Arabidopsis with 49.02% of identity
• Blastx: Autophagy-related protein 13b from Arabidopsis with 48.7% of identity
• Eggnog: Activates the ATG1 kinase in a nutritional condition dependent manner through the TOR pathway, leading to autophagy. Also invoved in cytoplasm to vacuole transport (Cvt) and more specifically in Cvt vesicle formation. Seems to play a role in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage during stationary phase (By similarity)(ENOG410Y4BP)
• Kegg: Link to kegg annotations (AT3G18770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462868.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;