Id Trinity | TRINITY_DN46382_c0_g1_i4 |
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Name Transcript | Ll_transcript_365957 |
Sequence | GCCAACACCAACCACTGCCCAATGGCCCCACTCTTCACCACTCCTACTCTTCTTCACTTCACTCTACCCTTTGATATTTCGTGTAAATGTCACTTTAAAT AAAATAAGACCACACACAAACAAACCTTATAATAATAGAAACTGACCAAATCAATCTTCTTCTCTACACTTTCTTAATCGAACCTTCTCTTCGTTTCTCA CACCACAACAAGTGAATTAACTGTTAGGAGATGTAGCTTGTGGGGTTTAAGCTATAAGCGGTATTAATTGGACTTCTGCTGAAATGGGTTTGGTTTTGTT ATTGGGCTGATTGACACATGGCACATAAAGCAATGACATCTTCTCATGGTAACGCACACTCGGAAGGTGCGGAGATGGAACAGATAATCACTGAATTTTT CGCTAAAAGTATTCACATAATACTCGAATCCAGAGCACTCTATGCGTCCTCACGTAATTCCTTTGGCGATCAAGTTGTGTCATCTCCATCTTCGTCGTCT TCATCCTCATCCAGCGTGCGCCCGAGGGATAAGTGGTTCAATTTGGCACTCCGGGAATGCCCTGCAGCATTGGAGAACATGGACCTGTGGCGCCAAAGTA ATCTTGAGCCGATTGTGATTGATGTGGTTTTGGTGCAGAGGCCTGTGAACTGGGACCCTACGAGTTGCCCCCTGAAAAAGGTTCTTCCTAGGAGTTCTTC AATGAAGGAAAGATACCCATTTTCCTGGAATAGTGATCAAGAAGAATTGGGAATTGAAACAAAGAGTGATAAGATTATAGAGAGATGGGTGTTGCAGTAT GAGAGTGGAAAAACAAGAGATTCTAATTCCAACAGTAGGAGGTCAAGCAACATTTCTTTGCATACTTTGTATAAGAAATCTACTTTACTTTTGAGGTCTT TGTATTCCACTGTTAGACTTTTACCTGCCCATAAAACTTTCAGAGAGCTTAATTCATCTGCGCAGATTCATCCATTCACCCTTGTGCACCGCATATCTTC TTTCATTGAGCCCTTCACCCGTAGAGAAGAGGCAGAAATGCTGAAATTTGGGTTCACCCCTGTGGATACTGCGTCCGGTAGGCTCTGCCTTTCAGTGATG TATTTACCATCAGCCTCAGAAGTGAGCTCTGAACCGACAACTCCTATGTCCCCACAAGTTATAACTGACTATGTCGGGAGTCCTTTGGCTGATCCTTTGA GGAGATATCCATTGATTCCGGTGACAGGATTACCATCATATGGGTCTCCATCGTCATTGCCCTTTTCAAGGCGACATAGTTGGAGTTATGACCATTTTAG AGCTTCTTCTCCTTCCATTGCTTGTTCGCCTTCACCTACATATTCAGAATCACACACATCAGTGTCTATTGCAAATTATCGGCATTTTCCACCTGCAAGT TTGCCTCCTCAACCAACTGAGTTATCATTGATTCAGAAGAGGAATACAGGTTTTGATGATCGTTATCCCCATCCATCACACTCAATAGACAATTTTGGGT CATTACCAACTAAAACAATTTTACGAACTGAAAGTGCTCCAGTCAGGATACCTGCTTCTGAAGTTACTAATTCCCCTGATACAAATATGAGCATGCAAAC AGGTGCAACAGCTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGCCGCGAAAATATTCTGGAGTGAAGATATCAGCTAACAGCTCGCCGCATATTTCATTT TCCAGAAGCTCCAGTAGATCTTATCAGGATGATTTTGATGATTCTGATTTTACTTGTCCTTTTAATGAAGATGATTTGACAGATCCAGAAACAAGAGCGG AATCTTTTGATCATGGACATATGGCTGATGCGCTCGAAGCCGGAGGATTCTTTCCTATCAGAAAGTCCCATGATGCTGCTGTTGGTACGCTTGTACATTT GCTGAAGAAAGCACCACCTCTCCGTCAAGATCTCTCCACTTCCGAGCACTTGTCACAAGGCGCACACTCTGAAATCTGGAACAACAACATTAAAGAGCCC AACCAGACCCCAGATGCTCCAATGCCAGTGAGCATGATGTCTTCAGGTCTCATAGCCACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATAGTT ACAGAGAGATGAAAAACTTATTGCTTACTGGAGGTAGGAAGAACCAGATATAATATACTTTTGCTTCTGTGAATGAGGTTCATGTTGATGTTAAATCAGC AAAATGCATGTACAGCTTTTTTACTTGATAACTCTTTCTTTGTATTGAAAATATGTGTAAATATGATGATCAAGCAAACCTTAGTCCGACTAGTCCGACT AGGTGGGGTCAACTGCATAAATTGAGCCGATATGAGCTTTTGGCACACTACAACTTTATGTTTGTAAAATACATGAAGCTGGTGATCAAATCTGAGCCAT TTGGCACACTACAATCTTATATTGTGTAAAATACATGAAACTGTATAATAACGACCACCCTTTCTCTTTCAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_144248; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_365957
Blastp | Autophagy-related protein 13b from Arabidopsis with 52.65% of identity |
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Blastx | Autophagy-related protein 13b from Arabidopsis with 51.04% of identity |
Eggnog | Activates the ATG1 kinase in a nutritional condition dependent manner through the TOR pathway, leading to autophagy. Also invoved in cytoplasm to vacuole transport (Cvt) and more specifically in Cvt vesicle formation. Seems to play a role in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage during stationary phase (By similarity)(ENOG410Y4BP) |
Kegg | Link to kegg annotations (AT3G18770) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019462868.1) |
Pfam | Autophagy-related protein 13 (PF10033.8) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |