| Id Trinity | TRINITY_DN46411_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_391212 |
| Sequence | CAGAGGCGGCGGTGTTAAAATATTTTTCCTTGCTGTGATTTATACTCTACTTGGAGTTCCCCTTTCGTATGTGCTTTGGTACAGGCCTCTCTATCGTGCT ATGAGGACGGATAGCGCATTGAAGTTCACCTGGTTTTTCTTGTTCTACTTGCTTCACATTGCATTTTGTATCTTTGCCGCAATTGCACCTCCAGTTGTTT TTCATGGAAAATCATTAACGGGCATCCTTGCAGCAATTGATGTCTTCTCAGACCATGTATTGGTTGGGGTAAGTTCTATTCCATGTGTCTGTATTACTGT ATTAACATTTATTTTCTTTTTGGGTAAAACTGTTCTGCATGCACTTTTAGAATATCACCTAAATGTTAACAAGGTGTTTTTGTTTTATCAGGTCGTATGT TGTAACTAATATGGAACTCATGTTTTTTTTGTTTTTCTATATTGTACAAGATTTTTAGAAGCATTCATATTCATGCATTAATCTCAAATGTTTTAATTTA TGTTCATTTACCGGTGAAAAAGTCTGAATATCAAGTCCTTATACTATGTGTATTTTCTAGAACTGAAAATGTAAAGAGATACGGAGGTTATTTGTTTTCT CAAGTTGATTGCCCCCTTCTATAGAATTATGATCTGATGTGCGAATCAATAACAATAAATTCCACGGAGACAGTTAATGTTAACGTCAAGCTAGTCACTT CGACTTGAATATTGTATGAGAAACCGGTCAAAATGATAACCAAGTCACTGAGGCTTTCAATTCATATATGTGGGGATAATAGTTTGTAGGAATTGACCAT TAACAGAACTAGATTGAGTGGTGCCTTGCTTCCCTAAGTGTAAGCCCAGAGCTTTTTGTTAGATAAAGATGATCTGGATTCCCTTTGACAAACAGAGGCA TAGAGAGGCTGTTCATTGCATTTTGCTACATGTTGAAGTTGCTGGAAAAGTGAAATTTCAATATCTTTGTGTGATACTTTAGTAAACATCAAACTCCATA ATCTTTTGCCTATTATTGTATGTTTGGGTTCAATCAATTTATTGTTATTCTTGCAGATATTCTATTTGGTTGGATTTGGTTTGTTTTGCTTGGAGTCTCT TCTAAGCCTGTGGGTGCTTCAGGTGAGGGATATATCATTTGAATGGATTTTCATTCTCAGTTTTCATATTGCTTCTGAGCAATGGGATAAATAAGACAAA TTAAAACAGCATGAACATTTAACTATGTTAGAACTGAAGGGTAAAATGGTATTTGCTTGGAGGAGTAAAGCGTAACAGCAGTTAGTTTAGAGAGGATCTT GTAGATAAGTAACTATAAGGATAATAAGGGTTTGATGGAGATACGTGTTCAAAATGTGGGGACTATGCTAAGAACCTTTAACTCCAACTCTCTATATTGT CAAATAAAGACACCAAGGTGTGATAGGAAGGACTGGTAGATTTTTTTATCAAGAAAAGGACTGAAAGAGGGTTGTAATTATCTTTAAGAAAGCTTGGTTG TAGAGAGGTTCTCATGGTAAAGAGCAGTCCACTGCATGAGTCTTTCATATATTGGGATTTGGGGAGGGTAGAAAGTAGAGGTAGATATATACAACTTTAC CTGTAAATGTACAGTCTTACTCCTGCAGGCAGAGGCTGTTTTCACAAGAGAGGTTATAATTTTGAGTATGAAATGTGTGATTTTTGGTGTGCATTCCAAA AAGAAGGAAGGTGTACTGCTGTAAATTTTGTTTCATCTGGGAATTTTTCTTGATTCCGTATGAAAGATGAGTTCAATACCTTTATCCGGAATTATCTCCT TTTAAATAATACTCTTGAACTCAATCATGAGTTGAAAGTTGAAACAACTGTTGCAGTTGATTAGCTAATTATCCTATTAGGAAAGTGGGGACTTTGTTAT GTGCATGATTTTACTTAAGCTGCTAGATTTGCCCATAACTTTTTTCAGAATATGTATTCGACATTATTGCTTGATGCTTATTTCCTTTTCTTTTGTGTGC AGAAAATATACATGTATTTCCGAGGGCATAAGTGAGATTATTCTGAGGTTGTGATCCATCGGCTTTACTTCCCAGTTTGGCTTAAGTATATTCTTTCTCT TTTGTCTACCTTTTCTTTTCCCATACAATATCTTTGTATGATAGCGCTCCTTGTTACTCCGGCTAATGGGTGATTATACCAGAGTTTAGAGTGTACTGTG ATGACCTCTTTGTAGTATGTCTTCTAGAAATGAAAATTTGCTTTATATAACCATAAATGTATGTAATGGATTTTGAGTGAAGGATTAGTGTGTACTGATA TTGAAGTTGTATTGTCGCCCCTCAAAGTTTATTAAATGACGATTTCTACTATTAAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_144426; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_391212
| Blastp | Secretory carrier-associated membrane protein 5 from Oryza sativa with 63.79% of identity |
|---|---|
| Blastx | Secretory carrier-associated membrane protein 4 from Arabidopsis with 78.89% of identity |
| Eggnog | secretory carrier membrane protein(ENOG410XSJN) |
| Kegg | Link to kegg annotations (9266378) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445255.1) |
| Pfam | SCAMP family (PF04144.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |