Ll_transcript_391269

• Id Trinity: TRINITY_DN46423_c0_g2_i3
• Name Transcript: Ll_transcript_391269
• Sequence: CAGAAATCAATTCCTTCCATTAAGGGATTCTCCAAAATCGCTTATCATATTCCATAATTCACTCACATTTCCTATGAGCAGTAATTTTTAACACAGGGTC CACATAGTCAATTCACTACCACTTCTCTGTACAAAATAAAACACCACCGCTGATTCTTTTTCACGACACCGTTTCATCCGACTCGTCCTCCGTTCCCTTC GCCGAACACCGTTACCTTCATTTTTCGGCCCCTTATTAATTGATTTCCATAATTACCCCTCCCTCTGGCTTTAAATTCCTTTTCGCACTACTCCAACACT GAAAATCGAAAACCCTTCGATTTCGATCGTCAGGGTTTTTCGTTTGTTCGATTATGGCGGATCGCGAAGACGAGGATTTGGAAATGGCGATTCGGATGAG TATGCACCACGCGCCGCCAGAGCCGAAGCGCAGCAAGCCGAGACACAGCTCCGTCGCTGTCGGAGTCGTCTCGGGGACGCCGGAGGAGTCAGTGGAGGCA AAGAGCCGGCGGATTAAGCGGGAGTTAATGGCAGCGGCTGCTGAAAAGCGTATGGCGGCGGTTGCAACGTCAAGGAGCAACTTGCCGGCGGCGGATAAAG GCGGTGGCGAGATTGGAAGGAGAGAGGAGGAGGAGGAGGAGCGAATGGCGATGGCCATGAGAAATTCGCCTTCGGCGATTACGGGTGGCGGAGAGGTTGG GAGGAGAAAGGAAGAGGAAGGCGAGGGGTTGATGAGTGTGGAAGAAGCGAATAAGTTATTTGTTATTGTGTTTGGAAATGAGGTCTCTAAGGAGATTCTT GCACAGTGGAGCAATCAGGGAATAAGGTTTAGCAGTGATCCAGAAACATCCATGGGTCTAGTGCAGCATGAAGGTGGGCCATGTGGCGTTTTGGCAGCTA TACAAGCGTTTGTTCTCAAGCATCTTATTTTCTTACATGATGAGTTGAAAGATGTATTAGCAATGGCTCGAAGCCAGGGTATGAGCACAATGATTAAAAA TCAATCCCTTCCATCAAATGATTTTTCTTCACCCGCTGATGGTGTAAAAGTAAGTGCCCTTGTAAGAAGCATGGGTGAAATATTATTTATGTGTGGAAGT AATGAAAGGGCTGTCATTGCAACTTTGAGCATTCTTGGGAGTGATATTCAGCAATCTGATGAAATTCCAACGGATGAGGTTATTGCAGAAGCACTTTCTG GTCTTTCAATTGAATCAGCCTTGGATCTGCAAAAAGTTCTTAGAGTAGAAACATACACATCCCAAGCAACTGCTTTGAAGAGGCTTCAAGCAATGATTCC CATATTCCATAGTCGAATGGGGGCGTTGCTTTTCCTGATCTCTGCTTTACTTTCTCGGGGACTGGACTTGGTTCAAACTGACAGGGATGATCCCAGCCTA CCTCTGGTTACCGCTCCATTTGGGCATGCCTCCCAGGAAATTGTAAACCTTCTGCTCTGTGGGCAGGCTGTGCCTAATGTGTTTGATGGGAAGATGGATT TAGGAGAGGAAATGTTTCTAAAAGGTATATCTCAACATGTAGAAGTTGGATTTCTCACACTGCTAGAATCCCTGAATTTCTGCAAGGTTGGTCAGTATTT GAAATGCCCAAAGTGGCCTATATGGGTTGTTGGGAGTGAATCCCACTACACAGTACTGTTTGCTCTTGAGACCAGTGTTCAAAACGAGAATGAACTGGAG GAAAGGGAATCACAGATTCGCAAAGCTTTTGATGCACAAGATCAGAGCGGAGGCGGTGGTTTCATTAGTGTGGAAGGGTTCTATCAAGTGCTCAGAGAAA CGGATATTAAACTTCCACAAGAGAAGCTTGAGCACCTTTGCAGCACAGGCTTCATTGTATGGAGTGAGTTCTGGCAAGTCATTTTAGATTTAGACAAGAG CTTGGGAGGTTTAAAGGATTCATCGGGACTGATGGGTAAGAAGGTTTTCGACCTCTACCATTTTAATGGAATTGCTAAATCAGATCTTACTGGCAGTCAT GTAAATGCTAGGGGTGAAGCTCCACTACAAAGACCCAGACTCACAAAATTGAGTGTTTCTGTTCCTCCAAGGTGGACGCCGGAGAAATTTATGGCAGACA CGGCAGTTTCTTCTGCTACTAGTGCAAACGATTCTTCTTTGAAGGACACTGAAGTATCTAAACCCGAGCCTTCTCAGCATGCACCTCTGGTAGACTGCAT AAGAACGCGCTGGCCTCGTGCCGTCTGCAGCTGGTCAGGGGATCCTCCAAGTATAGTTTAAGGGGTTTACATGGAGTCATTTGTCGCGGTTTTGTTGGTG TAACATAAAAATAATTGGTTGGTTTAGCAATGCAATAAGGAAGAAGAGATGAAGTTTTACTTTGATGTTGGAATTCAAGGCACAAACAGGGGTGAAGTAT CCTTACTTTCTCAACTATGTGCTTAGCCATATTTATAATGTGGAGTGATGTATCTTAAACATTGTTTGTGATGTCATTCAAAAGGTTACAAGGAAGAGGG ATGTTATATTTGTTGTGAAGTCAACTTGTAAAATCTATTTAAATGTACTATAGTCATGATTAGAAAAGATTTACTTCTTGGGAGATTATTAATAAACAAG AAGATCTTGCATTTAAAAATGTTGTAATACTAAATTATTTAGTGCTTGGCTTCTGAATAAGGTAAGTTGAATATTTATTATATTTACAATAATATGATAA ATTGTGAGTTTGGCGCTTTAGTTAGGTTGTTGGGTAGTGAGTCGATTTAAGTGGGAGACTCATGTATGAGCCG
• Tissue: pods
• Gene name: LI_gene_144480;
• Additional information: details;

Expression of Ll_transcript_391269

FPKM

• PAB: 13.3
• PNAB: 12
• PS1: 12.2
• PS2: 9.4
• PS3: 12.7
• PW1: 14.2
• PW2: 15.7
• PW3: 13.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_391269

• Blastp: Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 from Homo with 31.03% of identity
• Blastx: Ubiquitin carboxyl-terminal hydrolase MINDY-3 from Silurana with 27.18% of identity
• Eggnog: family with sequence similarity 188, member(ENOG410XSGV)
• Kegg: Link to kegg annotations (84182)
• CantataDB: Link to cantataDB annotations (CNT0001500)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413527.1)
• Pfam: Ubiquitin interaction motif (PF02809.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;