| Id Trinity | TRINITY_DN46433_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_391923 |
| Sequence | GCATTTCTCACCAAAGCTGACTCGGGTCCTTTGTCTCTCTCCCTCTGCACCTCGAGCCCAAAAATTGTACTCCATTTTCATTTACTCTCACTACAAAACT ACCACTAAGAACCTTCTAGAACAAAAATGCACATTTTCCTAACAAACTTCTCTTAACACTACATGCATCATTTCACTGCTTGATACATTTTCAGTTGTTA ATTTTGGTTTTAACTTGTTGAAAAAGAAGATGGTGAAAAAGAACAAAAGAAAGAAGGAGGAGATTGCTGAGGATTGGTGCTTTTTATGCAAAGATGGAGG ATCAATGAGGGTTTGTGATTTCAAGGATTGCCTTAAAGTTTATCATCCAGTTTGCGCCGGAGAAGAAGATTCGTTTTTGGAGGCTGACACTTATTGGTGT TGCGCTTCACATTATTGCTTCCGTTGCCGTAGAAGCTCAAAGTTTAAGTGCATTTGCTGCCCAATAGCGGTTTGTGGGCGCTGCTTAGGTTATGGTGAAT TTGCTATTGTCAAAAGGGACAAAGGATTTTGCAGCCACTGCTCAAAACTTGCACTACTAATTGAAGAAAATGTTGATGTTGATTCTGATGGGGTAAGATT GTTTTCAATCATATATTATATGCAGCAACAGGAGGTAAAAACCTGAAACAGTATTTTGAATCTTAAATTTTAAAGAAAAATAACAAAATGCTATCTATCA ACAATTATGTATATTTACATATTGGTAATTGTTAACAGGAGTTACCAAAGTCAACATCTTGTGATGCTGAGCAACAATAATAGTACAGAGGCACTTGTTC TCCATGTTTTAACTTTTACCTATTTTCAAAACATGTTTGAAGTGCTATTGTTTTAACTATTTTTAAAATAAAGTCCTATTTATTATTTTAAAATGAGAAA CATGGAAACACATTCTCAAACAGGTTCACCCTGGTTGTTTCTCTTACAGGAGAAAATTGTTTTGAAATCATAAACCAAACTGCCACTAAATATTTTACCT TCATATGACTTGTATTGTATGAACCGAGAGTCTGAGATTTAGCATATAAAATCTTAGCATTTCTAGAAAAGAGTCAAACCACGGTCAAATTTAACTAATA TAGTTTTTGAGTTTGTTATGCTTAATGGATTCTGATGTATGGAAAGTTTCAAATGACTGAATAAAATTTCAATGTAAGCCTAGTTGTAGAATTTTACCTT GCCCAGTTTAATATTTTCACTTTGAGCTTAAGGTTAATTTTATTTATTTGAATACTTGGAATTGAGTAGGGAAAGGTTATCTCTTGGTCTGGGCCCTATA GAAAGGTTTCTTTCATGTTTATATCTGTTTCTTCTGACATTTCTTTGTCAACAGGGAAAGGTAGATTTCAAAGATTCAAATACATATGAATCCTATTTTT TAGAATATTACGAAGCTATGAAAATAAAAGAAGGGCTGAACTCTTCACATGTGCATTCCGCGCATAACTTCTTGAAGAATGGTAAAAACCAGAGTAACTT GGATCTAGCTGGAATAGGTGAAGGGGAAGATGATGGTGGAGATTCTGAAGACGGGAGTGACTATATAGTTTCTGATTATGATGACATGAATGATACAGCA GGAGTTAAACCAATGAAGAAAAAGCAGAGATGCAAAAAGCAACTAAAATCAACAAAAGGAAATATGAAAGATAAGAAAAAGGAGTTTATTGGATGGGGTT CAAGAAGTCTCATAGAATTTCTTAATTATATTGGTAGAGATACGAGTAAAGAATGTTCTGAACATGATGTTGCTTCGGTCATTATTGAGTACTGCAAAGT AAACAACCTCTTTGACTCCAAGAAAAAGAGGAAGGTGCTTTGTGATGTAAAACTGAGTTCTTTACTCGGGAGGAAATCAGTGAATAGAAACAACATACAA AACCTTTTGGCACATCATTTTGCTGAGAATGTGGAGGAATTTGATGATATCACTAGTAGTTCAGAAAATAGGGATGATAATGGGCCATTCAAATGTTCGA GCAAGGGGAAATTGTCAAGTACAAAATCTATTCAGAACCTAGTTCCTGAAGAGCGTAAAAGCAGTTTTGCAGCCATAGTTAGTTCAAATATCAAGCTTGT ATACTTAAAGAGGAGTTTAGTGGAGGGGCTTTTGAAACAGCCAGAAACTTTTAGTGACAAAGTAATGGGAAGTTTTGTAAGAGTCAAGTCTGACCCGAAT GATTATTTACAGAAGAATTCCTATCTGCTTGTGCAGGTTGTAGGAATAAACAGGTCGTCAAAGAATAACGAAATCAACGGGGAAGTTCTGCTTCAGCTTT GCTACATGCCAAAAGATGTACCTATCTGCAAAATTTCAGATGATGACTTTACTGAGGAAGAATGTCAAGATCTCTATCAGAGAATGAAAAATGGACTGCT CAAGCAGCCTACCGTACTGGAGCTTGAACAGAAAGCGAGAAGTCTGCATGAAGATATAATAAAGCATTGGATCCCGAGGGAGCTGACACT BLAST |
| Tissue | pods |
| Gene name | LI_gene_144562; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_391923
| Blastp | Uncharacterized protein At5g08430 from Arabidopsis with 45.55% of identity |
|---|---|
| Blastx | Uncharacterized protein At5g08430 from Arabidopsis with 45.82% of identity |
| Eggnog | SWI SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member(COG5531) |
| Kegg | Link to kegg annotations (AT5G08430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419914.1) |
| Pfam | SWIB/MDM2 domain (PF02201.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |