Ll_transcript_391940

Id TrinityTRINITY_DN46433_c0_g1_i16
Name TranscriptLl_transcript_391940
SequenceGCATTTCTCACCAAAGCTGACTCGGGTCCTTTGTCTCTCTCCCTCTGCACCTCGAGCCCAAAAATTGTACTCCATTTTCATTTACTCTCACTACAAAACT ACCACTAAGAACCTTCTAGAACAAAAATGCACATTTTCCTAACAAACTTCTCTTAACACTACATGCATCATTTCACTGCTTGATACATTTTCAGATGGTG AAAAAGAACAAAAGAAAGAAGGAGGAGATTGCTGAGGATTGGTGCTTTTTATGCAAAGATGGAGGATCAATGAGGGTTTGTGATTTCAAGTAAGCTCACA AAAATGAACATTGCTACAAATTACTAAATTTGACCCTTGCAAATGAAAACCTCAAAATGCTCCTAACTCTGTTAGTAAGAATATTAAGTGATGGTTAAGT TAGTACTTGATAAGAAGTTAAGAACAAAGGAATAGTTGTCTCTCAAATTAGTACCCTTTTAACTATATTTGAGGTACTTAATGACCAAATTGAAGTTATT TTCGGGGGTTCATTTGTCAGGTTTGATTTTGGGTTGGATATTTTGATTGGTGACTAAAATGAGTACAAAAATGTTACACCCTCCTAACTAATTAGCCTAA TAATCCTCCTTGTATTACTTTCATGTCACTTTCTTATGGATAGGTAGGATTTTGAAGTTAATTTGTTAGGAGGATATAACACTACTCAAATGATTATTCG CTCTTAATTTTATTTTATATATTAAATTCGTCATTTCCAATACAAAGTTGTCGGGCTAACCAAATCCTTTTTTTATGATTTACATTTAGTAATTTGAGAA ATGCTAAGAACATACTTTTCTCCATTAACACATAACTGAGTGGATTTTTTTTATAACGGTAGAGTCCACAAAATCACATGGGTAATGGGTTCGCTATATA TTTAGAGGATTCTACAAGAACTCTTGCCTATAACAGATGGCGTATTAATGAGAAAATAATCTGTTGCTAGCATTCTTCTAGTAATTATAGTTGTGCACAT TTTTTCTCTGGACATTTTTAATTTGAAAAGATGCAAGAAGCCTAAGCTAGCAATGGTTATTTTTGTGCTCAAGTAATTTGGAAATGTAAGAGATTAGAAA AGGATATGCGATAGACCATCCTAACCCCGCTTCAAAATCAAAGGCTTGGAGGAGCTATTTTTCCCAGGACATAGTCCAGATGAGTGTGAAGTGAATTCCT AAGTTTTTTTTGTATGCTCAATTGAGTTTCTTCCTTCCTTGGTAGTGACAGAATAATCCATGAAAGTGGAAAATGTAATTTCTTATTTTTGTTTTAAATA TATAAGCTTCGGGTTTTTCTAATTTACTACATAATATTGCAACTTTTCACTATTTTTAAAGAAAAAAAGGCAAGCAAGATAGTGCATGAATTTTAACATG TGCTTGTTTGCATCATTTATAAATGGTAGTATTCATTTCAAACTTGATCCGTATCCTATAGTATGTGCCTGTTTTTTGAAAAGAATAGGAATTATGAGGT AGGTTGCTCCAATAAAGAAGTTGCTGGTTTACTTTAGGTTTTAATTTATTCTTCTCCGTTGATAGAATTCTGATTTTCTTTGAAAGATTTGAGTTTTTCT TACCCAAGTTTAGACGTCACTATTACTAGTATGTCTGTTAAATTAATGGTGGGTGAAGAGTAGGATCATTTAACAGGGATATAATTGTCATGCACGTGAC TTCCTTTTGTATAGTTAATTAACTCATGTTGTGTAAAGGGATTGCCTTAAAGTTTATCATCCAGTTTGCGCCGGAGAAGAAGATTCGTTTTTGGAGGCTG ACACTTATTGGTGTTGCGCTTCACATTATTGCTTCCGTTGCCGTAGAAGCTCAAAGTTTAAGTGCATTTGCTGCCCAATAGCGGTTTGTGGGCGCTGCTT AGGTTATGGTGAATTTGCTATTGTCAAAAGGGACAAAGGATTTTGCAGCCACTGCTCAAAACTTGCACTACTAATTGAAGAAAATGTTGATGTTGATTCT GATGGGGTAAGATTGTTTTCAATCATATATTATATGCAGCAACAGGAGGTAAAAACCTGAAACAGTATTTTGAATCTTAAATTTTAAAGAAAAATAACAA AATGCTATCTATCAACAATTATGTATATTTACATATTGGTAATTGTTAACAGGAGTTACCAAAGTCAACATCTTGTGATGCTGAGCAACAATAATAGTAC AGAGGCACTTGTTCTCCATGTTTTAACTTTTACCTATTTTCAAAACATGTTTGAAGTGCTATTGTTTTAACTATTTTTAAAATAAAGTCCTATTTATTAT TTTAAAATGAGAAACATGGAAACACATTCTCAAACAGGTTCACCCTGGTTGTTTCTCTTACAGGAGAAAATTGTTTTGAAATCATAAACCAAACTGCCAC TAAATATTTTACCTTCATATGACTTGTATTGTATGAACCGAGAGTCTGAGATTTAGCATATAAAATCTTAGCATTTCTAGAAAAGAGTCAAACCACGGTC AAATTTAACTAATATAGTTTTTGAGTTTGTTATGCTTAATGGATTCTGATGTATGGAAAGTTTCAAATGACTGAATAAAATTTCAATGTAAGCCTAGTTG TAGAATTTTACCTTGCCCAGTTTAATATTTTCACTTTGAGCTTAAGGTTAATTTTATTTATTTGAATACTTGGAATTGAGTAGGGAAAGGTTATCTCTTG GTCTGGGCCCTATAGAAAGGTTTCTTTCATGTTTATATCTGTTTCTTCTGACATTTCTTTGTCAACAGGGAAAGGTAGATTTCAAAGATTCAAATACATA TGAATCCTATTTTTTAGAATATTACGAAGCTATGAAAATAAAAGAAGGGCTGAACTCTTCACATGTGCATTCCGCGCATAACTTCTTGAAGAATGGTAAA AACCAGAGTAACTTGGATCTAGCTGGAATAGGTGAAGGGGAAGATGATGGTGGAGATTCTGAAGACGGGAGTGACTATATAGTTTCTGATTATGATGACA TGAATGATACAGCAGGAGTTAAACCAATGAAGAAAAAGCAGAGATGCAAAAAGCAACTAAAATCAACAAAAGGAAATATGAAAGATAAGAAAAAGGAGTT TATTGGATGGGGTTCAAGAAGTCTCATAGAATTTCTTAATTATATTGGTAGAGATACGAGTAAAGAATGTTCTGAACATGATGTTGCTTCGGTCATTATT GAGTACTGCAAAGTAAACAACCTCTTTGACTCCAAGAAAAAGAGGAAGGTGCTTTGTGATGTAAAACTGAGTTCTTTACTCGGGAGGAAATCAGTGAATA GAAACAACATACAAAACCTTTTGGCACATCATTTTGCTGAGAATGTGGAGGAATTTGATGATATCACTAGTAGTTCAGAAAATAGGGATGATAATGGGCC ATTCAAATGTTCGAGCAAGGGGAAATTGTCAAGTACAAAATCTATTCAGAACCTAGTTCCTGAAGAGCGTAAAAGCAGTTTTGCAGCCATAGTTAGTTCA AATATCAAGCTTGTATACTTAAAGAGGAGTTTAGTGGAGGGGCTTTTGAAACAGCCAGAAACTTTTAGTGACAAAGTAATGGGAAGTTTTGTAAGAGTCA AGTCTGACCCGAATGATTATTTACAGAAGAATTCCTATCTGCTTGTGCAGGTTGTAGGAATAAACAGGTCGTCAAAGAATAACGAAATCAACGGGGAAGT TCTGCTTCAGCTTTGCTACATGCCAAAAGATGTACCTATCTGCAAAATTTCAGATGATGACTTTACTGAGGAAGAATGTCAAGATCTCTATCAGAGAATG AAAAATGGACTGCTCAAGCAGCCTACCGTACTGGAGCTTGAACAGAAAGCGAGAAGTCTGCATGAAGATATAATAAAGCATTGGATCCCGAGGGAGCTGA CACTGTTACAAAATCGCATTGATATGGCCAATGAAAAGGGGTGGAGGAGAGAACTTGCTGAGTACATAGAGCGAAAACTGAAGCTTCAGACTGCATCAGA ACAGTCACGTTTATTAAGTGATATTCCAAAAGTAATTCCTGAAATAGTTGATAGCAAACTATCACCGAAGAATTCCCCGAGAAATGATAGGCTTGAGGGA AATGGGTTGCCAGAATTAGCCATGGGAAAGACTTCCAACTCTGTCGGACGTTATCCCAAGCATAATGCTTTTGCTCGTTGGCCTCATAATACAACAGATG TTGCAGACTCTCCTGTCTCTGCTGAAAAATTGTTTGAGCATCCAGTTTCCCAAGATAAAGGCACTCTTCAATCTACAACAAATGAAATGCAACATGATCC CAAGGCTACACTGCCTGAACAAACAAGATTGAACTCTCAGACCTCAAATAATGGTTTGCATTGTCCTAGGAACACAAGATCTAGATCTGGTATAGATGGC AGAAAACCGAATGCCATGAATACTAAAAAGAAAATAGAGGAAAAACAAAGCATTTCCATTGCTGACCCTATTGAGGCAAGTGCCAATGACAAACAACAGG ATGCAAGTATCTCAGATATTCCAATGGGCAAAAAGATAGTTAACATTTCAACCATAGACGTTATCAAGTTAAGTGATACAGATGAAGAAGATGAAAGTAT TGCAGACATTTCAGCAGGAAGGAAGGTAGTGGAGGATCCTGAGAGTCCTGTTTGGAACTGTTTAAGTCCTTTTGGTGAAAGAAGTGGACCCTATTCATTG TCTGTACTACGACGTTGGATTGCAACTGCTTCATATCACTTAGAATTCAAGGTTTGGAAGACAGGACAGAGTGAAGCACAAGCAGTACTTCTCACTGATG CTCTTAGCCAAAGTTTCCCTACTATGTAGGTAAATATGTAAATGAAAGGAAAGCATTGCCTTAAGTACATAATCCGTGTTAATATATGGTTTTTGAATAC TTGAGATTGAACCTGGTAGGTGTTTGTGTGGAAGTTGCAAGTACTTTATTTTCATGTGGTTTCCTAATACTGATGGTCTTCAAGAAGGAAAAAGATTAAT AATAGAGGTTCTATTTTGTGTGCATTTCCAACATTTTTCCCCTTTACCTTTGTCATGCAATTTTGAGCACAGGGTAGGAACTTAACAAGTCATAGCTAAT ATGTTGTAGCATTTGCTCTCCTCTCCTATCTTTTATTGCAAAACTTGAAATGACATACATATTCATCAAAACTAGTGAGCAACATTGAAAGTAGAGTGTT GCTTGGTGCAGACAGTAACATAAAACACATTTCAAACAATGATATATCTGCAAAGGGCATATGATGTAATTGTCTAAATCCC BLAST
Tissuepods
Gene nameLI_gene_144562; 
Additional informationdetails; 

Expression of Ll_transcript_391940

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_391940
BlastpUncharacterized protein At5g08430 from Arabidopsis with 35.68% of identity
BlastxUncharacterized protein At5g08430 from Arabidopsis with 47.66% of identity
EggnogSWI SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member(COG5531)
KeggLink to kegg annotations (AT5G08430)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019419914.1)
PfamSWIB/MDM2 domain (PF02201.17)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;