Ll_transcript_391941

• Id Trinity: TRINITY_DN46433_c0_g1_i17
• Name Transcript: Ll_transcript_391941
• Sequence: GCATTTCTCACCAAAGCTGACTCGGGTCCTTTGTCTCTCTCCCTCTGCACCTCGAGCCCAAAAATTGTACTCCATTTTCATTTACTCTCACTACAAAACT ACCACTAAGAACCTTCTAGAACAAAAATGCACATTTTCCTAACAAACTTCTCTTAACACTACATGCATCATTTCACTGCTTGATACATTTTCAGGTTTCT CAAACATTCAAATCTCTTCAATTTCTCTCTAATTTTTATTTCAAGATGGTGAAAAAGAACAAAAGAAAGAAGGAGGAGATTGCTGAGGATTGGTGCTTTT TATGCAAAGATGGAGGATCAATGAGGGTTTGTGATTTCAAGTAAGCTCACAAAAATGAACATTGCTACAAATTACTAAATTTGACCCTTGCAAATGAAAA CCTCAAAATGCTCCTAACTCTGTTAGTAAGAATATTAAGTGATGGTTAAGTTAGTACTTGATAAGAAGTTAAGAACAAAGGAATAGTTGTCTCTCAAATT AGTACCCTTTTAACTATATTTGAGGTACTTAATGACCAAATTGAAGTTATTTTCGGGGGTTCATTTGTCAGGTTTGATTTTGGGTTGGATATTTTGATTG GTGACTAAAATGAGTACAAAAATGTTACACCCTCCTAACTAATTAGCCTAATAATCCTCCTTGTATTACTTTCATGTCACTTTCTTATGGATAGGTAGGA TTTTGAAGTTAATTTGTTAGGAGGATATAACACTACTCAAATGATTATTCGCTCTTAATTTTATTTTATATATTAAATTCGTCATTTCCAATACAAAGTT GTCGGGCTAACCAAATCCTTTTTTTATGATTTACATTTAGTAATTTGAGAAATGCTAAGAACATACTTTTCTCCATTAACACATAACTGAGTGGATTTTT TTTATAACGGTAGAGTCCACAAAATCACATGGGTAATGGGTTCGCTATATATTTAGAGGATTCTACAAGAACTCTTGCCTATAACAGATGGCGTATTAAT GAGAAAATAATCTGTTGCTAGCATTCTTCTAGTAATTATAGTTGTGCACATTTTTTCTCTGGACATTTTTAATTTGAAAAGATGCAAGAAGCCTAAGCTA GCAATGGTTATTTTTGTGCTCAAGTAATTTGGAAATGTAAGAGATTAGAAAAGGATATGCGATAGACCATCCTAACCCCGCTTCAAAATCAAAGGCTTGG AGGAGCTATTTTTCCCAGGACATAGTCCAGATGAGTGTGAAGTGAATTCCTAAGTTTTTTTTGTATGCTCAATTGAGTTTCTTCCTTCCTTGGTAGTGAC AGAATAATCCATGAAAGTGGAAAATGTAATTTCTTATTTTTGTTTTAAATATATAAGCTTCGGGTTTTTCTAATTTACTACATAATATTGCAACTTTTCA CTATTTTTAAAGAAAAAAAGGCAAGCAAGATAGTGCATGAATTTTAACATGTGCTTGTTTGCATCATTTATAAATGGTAGTATTCATTTCAAACTTGATC CGTATCCTATAGTATGTGCCTGTTTTTTGAAAAGAATAGGAATTATGAGGTAGGTTGCTCCAATAAAGAAGTTGCTGGTTTACTTTAGGTTTTAATTTAT TCTTCTCCGTTGATAGAATTCTGATTTTCTTTGAAAGATTTGAGTTTTTCTTACCCAAGTTTAGACGTCACTATTACTAGTATGTCTGTTAAATTAATGG TGGGTGAAGAGTAGGATCATTTAACAGGGATATAATTGTCATGCACGTGACTTCCTTTTGTATAGTTAATTAACTCATGTTGTGTAAAGGGATTGCCTTA AAGTTTATCATCCAGTTTGCGCCGGAGAAGAAGATTCGTTTTTGGAGGCTGACACTTATTGGTGTTGCGCTTCACATTATTGCTTCCGTTGCCGTAGAAG CTCAAAGTTTAAGTGCATTTGCTGCCCAATAGCGGTTTGTGGGCGCTGCTTAGGTTATGGTGAATTTGCTATTGTCAAAAGGGACAAAGGATTTTGCAGC CACTGCTCAAAACTTGCACTACTAATTGAAGAAAATGTTGATGTTGATTCTGATGGGGGAAAGGTAGATTTCAAAGATTCAAATACATATGAATCCTATT TTTTAGAATATTACGAAGCTATGAAAATAAAAGAAGGGCTGAACTCTTCACATGTGCATTCCGCGCATAACTTCTTGAAGAATGGTAAAAACCAGAGTAA CTTGGATCTAGCTGGAATAGGTGAAGGGGAAGATGATGGTGGAGATTCTGAAGACGGGAGTGACTATATAGTTTCTGATTATGATGACATGAATGATACA GCAGGAGTTAAACCAATGAAGAAAAAGCAGAGATGCAAAAAGCAACTAAAATCAACAAAAGGAAATATGAAAGATAAGAAAAAGGAGTTTATTGGATGGG GTTCAAGAAGTCTCATAGAATTTCTTAATTATATTGGTAGAGATACGAGTAAAGAATGTTCTGAACATGATGTTGCTTCGGTCATTATTGAGTACTGCAA AGTAAACAACCTCTTTGACTCCAAGAAAAAGAGGAAGGTGCTTTGTGATGTAAAACTGAGTTCTTTACTCGGGAGGAAATCAGTGAATAGAAACAACATA CAAAACCTTTTGGCACATCATTTTGCTGAGAATGTGGAGGAATTTGATGATATCACTAGTAGTTCAGAAAATAGGGATGATAATGGGCCATTCAAATGTT CGAGCAAGGGGAAATTGTCAAGTACAAAATCTATTCAGAACCTAGTTCCTGAAGAGCGTAAAAGCAGTTTTGCAGCCATAGTTAGTTCAAATATCAAGCT TGTATACTTAAAGAGGAGTTTAGTGGAGGGGCTTTTGAAACAGCCAGAAACTTTTAGTGACAAAGTAATGGGAAGTTTTGTAAGAGTCAAGTCTGACCCG AATGATTATTTACAGAAGAATTCCTATCTGCTTGTGCAGGTTGTAGGAATAAACAGGTCGTCAAAGAATAACGAAATCAACGGGGAAGTTCTGCTTCAGC TTTGCTACATGCCAAAAGATGTACCTATCTGCAAAATTTCAGATGATGACTTTACTGAGGAAGAATGTCAAGATCTCTATCAGAGAATGAAAAATGGACT GCTCAAGCAGCCTACCGTACTGGAGCTTGAACAGAAAGCGAGAAGTCTGCATGAAGATATAATAAAGCATTGGATCCCGAGGGAGCTGACACTGTTACAA AATCGCATTGATATGGCCAATGAAAAGGGGTGGAGGAGAGAACTTGCTGAGTACATAGAGCGAAAACTGAAGCTTCAGACTGCATCAGAACAGTCACGTT TATTAAGTGATATTCCAAAAGTAATTCCTGAAATAGTTGATAGCAAACTATCACCGAAGAATTCCCCGAGAAATGATAGGCTTGAGGGAAATGGGTTGCC AGAATTAGCCATGGGAAAGACTTCCAACTCTGTCGGACGTTATCCCAAGCATAATGCTTTTGCTCGTTGGCCTCATAATACAACAGATGTTGCAGACTCT CCTGTCTCTGCTGAAAAATTGTTTGAGCATCCAGTTTCCCAAGATAAAGGCACTCTTCAATCTACAACAAATGAAATGCAACATGATCCCAAGGCTACAC TGCCTGAACAAACAAGATTGAACTCTCAGACCTCAAATAATGGTTTGCATTGTCCTAGGAACACAAGATCTAGATCTGGTATAGATGGCAGAAAACCGAA TGCCATGAATACTAAAAAGAAAATAGAGGAAAAACAAAGCATTTCCATTGCTGACCCTATTGAGGCAAGTGCCAATGACAAACAACAGGATGCAAGTATC TCAGATATTCCAATGGGCAAAAAGATAGTTAACATTTCAACCATAGACGTTATCAAGTTAAGTGATACAGATGAAGAAGATGAAAGTATTGCAGACATTT CAGCAGGAAGGAAGGTAGTGGAGGATCCTGAGAGTCCTGTTTGGAACTGTTTAAGTCCTTTTGGTGAAAGAAGTGGACCCTATTCATTGTCTGTACTACG ACGTTGGATTGCAACTGCTTCATATCACTTAGAATTCAAGGTTTGGAAGACAGGACAGAGTGAAGCACAAGCAGTACTTCTCACTGATGCTCTTAGCCAA AGTTTCCCTACTATGTAGGTAAATATGTAAATGAAAGGAAAGCATTGCCTTAAGTACATAATCCGTGTTAATATATGGTTTTTGAATACTTGAGATTGAA CCTGGTAGGTGTTTGTGTGGAAGTTGCAAGTACTTTATTTTCATGTGGTTTCCTAATACTGATGGTCTTCAAGAAGGAAAAAGATTAATAATAGAGGTTC TATTTTGTGTGCATTTCCAACATTTTTCCCCTTTACCTTTGTCATGCAATTTTGAGCACAGGGTAGGAACTTAACAAGTCATAGCTAATATGTTGTAGCA TTTGCTCTCCTCTCCTATCTTTTATTGCAAAACTTGAAATGACATACATATTCATCAAAACTAGTGAGCAACATTGAAAGTAGAGTGTTGCTTGGTGCAG ACAGTAACATAAAACACATTTCAAACAATGATATATCTGCAAAGGGCATATGATGTAATTGTCTAAATCCC
• Tissue: pods
• Gene name: LI_gene_144562;
• Additional information: details;

Expression of Ll_transcript_391941

FPKM

• PAB: 0
• PNAB: 0.9
• PS1: 6.2
• PS2: 3.2
• PS3: 3.1
• PW1: 0.3
• PW2: 0.5
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_391941

• Blastp: Uncharacterized protein At5g08430 from Arabidopsis with 35.68% of identity
• Blastx: Uncharacterized protein At5g08430 from Arabidopsis with 47.37% of identity
• Eggnog: SWI SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member(COG5531)
• Kegg: Link to kegg annotations (AT5G08430)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419914.1)
• Pfam: SWIB/MDM2 domain (PF02201.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;