Id Trinity | TRINITY_DN46433_c0_g1_i4 |
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Name Transcript | Ll_transcript_391927 |
Sequence | GCATTTCTCACCAAAGCTGACTCGGGTCCTTTGTCTCTCTCCCTCTGCACCTCGAGCCCAAAAATTGTACTCCATTTTCATTTACTCTCACTACAAAACT ACCACTAAGAACCTTCTAGAACAAAAATGCACATTTTCCTAACAAACTTCTCTTAACACTACATGCATCATTTCACTGCTTGATACATTTTCAGGTTTCT CAAACATTCAAATCTCTTCAATTTCTCTCTAATTTTTATTTCAAGGTTTTATTCTAACACTCTACATTCTCTCATTTCCCCATTTTTGCTGTGTTTCATT ATTTCTTATCAAATGGGTCATTACAGTTACATGTTTCATAAAAGATTGAAACTTTCACATGCTAACCGTTCATTCCTTAAATTTCTCTCATTTTTGTTGA TGGGTTTTAGTGTACTACATTGTGTAATTTTTCTCCACTTTTTGTTTCTTTAGTTCTTTCTCAGCAAATGGGCATTGCTATTTTTATCCGATTTTGATTT TCTTCAACTATACTGTGCACAGTTGTTAATTTTGGTTTTAACTTGTTGAAAAAGAAGATGGTGAAAAAGAACAAAAGAAAGAAGGAGGAGATTGCTGAGG ATTGGTGCTTTTTATGCAAAGATGGAGGATCAATGAGGGTTTGTGATTTCAAGTAAGCTCACAAAAATGAACATTGCTACAAATTACTAAATTTGACCCT TGCAAATGAAAACCTCAAAATGCTCCTAACTCTGTTAGTAAGAATATTAAGTGATGGTTAAGTTAGTACTTGATAAGAAGTTAAGAACAAAGGAATAGTT GTCTCTCAAATTAGTACCCTTTTAACTATATTTGAGGTACTTAATGACCAAATTGAAGTTATTTTCGGGGGTTCATTTGTCAGGTTTGATTTTGGGTTGG ATATTTTGATTGGTGACTAAAATGAGTACAAAAATGTTACACCCTCCTAACTAATTAGCCTAATAATCCTCCTTGTATTACTTTCATGTCACTTTCTTAT GGATAGGTAGGATTTTGAAGTTAATTTGTTAGGAGGATATAACACTACTCAAATGATTATTCGCTCTTAATTTTATTTTATATATTAAATTCGTCATTTC CAATACAAAGTTGTCGGGCTAACCAAATCCTTTTTTTATGATTTACATTTAGTAATTTGAGAAATGCTAAGAACATACTTTTCTCCATTAACACATAACT GAGTGGATTTTTTTTATAACGGTAGAGTCCACAAAATCACATGGGTAATGGGTTCGCTATATATTTAGAGGATTCTACAAGAACTCTTGCCTATAACAGA TGGCGTATTAATGAGAAAATAATCTGTTGCTAGCATTCTTCTAGTAATTATAGTTGTGCACATTTTTTCTCTGGACATTTTTAATTTGAAAAGATGCAAG AAGCCTAAGCTAGCAATGGTTATTTTTGTGCTCAAGTAATTTGGAAATGTAAGAGATTAGAAAAGGATATGCGATAGACCATCCTAACCCCGCTTCAAAA TCAAAGGCTTGGAGGAGCTATTTTTCCCAGGACATAGTCCAGATGAGTGTGAAGTGAATTCCTAAGTTTTTTTTGTATGCTCAATTGAGTTTCTTCCTTC CTTGGTAGTGACAGAATAATCCATGAAAGTGGAAAATGTAATTTCTTATTTTTGTTTTAAATATATAAGCTTCGGGTTTTTCTAATTTACTACATAATAT TGCAACTTTTCACTATTTTTAAAGAAAAAAAGGCAAGCAAGATAGTGCATGAATTTTAACATGTGCTTGTTTGCATCATTTATAAATGGTAGTATTCATT TCAAACTTGATCCGTATCCTATAGTATGTGCCTGTTTTTTGAAAAGAATAGGAATTATGAGGTAGGTTGCTCCAATAAAGAAGTTGCTGGTTTACTTTAG GTTTTAATTTATTCTTCTCCGTTGATAGAATTCTGATTTTCTTTGAAAGATTTGAGTTTTTCTTACCCAAGTTTAGACGTCACTATTACTAGTATGTCTG TTAAATTAATGGTGGGTGAAGAGTAGGATCATTTAACAGGGATATAATTGTCATGCACGTGACTTCCTTTTGTATAGTTAATTAACTCATGTTGTGTAAA GGGATTGCCTTAAAGTTTATCATCCAGTTTGCGCCGGAGAAGAAGATTCGTTTTTGGAGGCTGACACTTATTGGTGTTGCGCTTCACATTATTGCTTCCG TTGCCGTAGAAGCTCAAAGTTTAAGTGCATTTGCTGCCCAATAGCGGTTTGTGGGCGCTGCTTAGGTTATGGTGAATTTGCTATTGTCAAAAGGGACAAA GGATTTTGCAGCCACTGCTCAAAACTTGCACTACTAATTGAAGAAAATGTTGATGTTGATTCTGATGGGGTAAGATTGTTTTCAATCATATATTATATGC AGCAACAGGAGGTAAAAACCTGAAACAGTATTTTGAATCTTAAATTTTAAAGAAAAATAACAAAATGCTATCTATCAACAATTATGTATATTTACATATT GGTAATTGTTAACAGGAGTTACCAAAGTCAACATCTTGTGATGCTGAGCAACAATAATAGTACAGAGGCACTTGTTCTCCATGTTTTAACTTTTACCTAT TTTCAAAACATGTTTGAAGTGCTATTGTTTTAACTATTTTTAAAATAAAGTCCTATTTATTATTTTAAAATGAGAAACATGGAAACACATTCTCAAACAG GTTCACCCTGGTTGTTTCTCTTACAGGAGAAAATTGTTTTGAAATCATAAACCAAACTGCCACTAAATATTTTACCTTCATATGACTTGTATTGTATGAA CCGAGAGTCTGAGATTTAGCATATAAAATCTTAGCATTTCTAGAAAAGAGTCAAACCACGGTCAAATTTAACTAATATAGTTTTTGAGTTTGTTATGCTT AATGGATTCTGATGTATGGAAAGTTTCAAATGACTGAATAAAATTTCAATGTAAGCCTAGTTGTAGAATTTTACCTTGCCCAGTTTAATATTTTCACTTT GAGCTTAAGGTTAATTTTATTTATTTGAATACTTGGAATTGAGTAGGGAAAGGTTATCTCTTGGTCTGGGCCCTATAGAAAGGTTTCTTTCATGTTTATA TCTGTTTCTTCTGACATTTCTTTGTCAACAGGGAAAGGTAGATTTCAAAGATTCAAATACATATGAATCCTATTTTTTAGAATATTACGAAGCTATGAAA ATAAAAGAAGGGCTGAACTCTTCACATGTGCATTCCGCGCATAACTTCTTGAAGAATGGTAAAAACCAGAGTAACTTGGATCTAGCTGGAATAGGTGAAG GGGAAGATGATGGTGGAGATTCTGAAGACGGGAGTGACTATATAGTTTCTGATTATGATGACATGAATGATACAGCAGGAGTTAAACCAATGAAGAAAAA GCAGAGATGCAAAAAGCAACTAAAATCAACAAAAGGAAATATGAAAGATAAGAAAAAGGAGTTTATTGGATGGGGTTCAAGAAGTCTCATAGAATTTCTT AATTATATTGGTAGAGATACGAGTAAAGAATGTTCTGAACATGATGTTGCTTCGGTCATTATTGAGTACTGCAAAGTAAACAACCTCTTTGACTCCAAGA AAAAGAGGAAGGTGCTTTGTGATGTAAAACTGAGTTCTTTACTCGGGAGGAAATCAGTGAATAGAAACAACATACAAAACCTTTTGGCACATCATTTTGC TGAGAATGTGGAGGAATTTGATGATATCACTAGTAGTTCAGAAAATAGGGATGATAATGGGCCATTCAAATGTTCGAGCAAGGGGAAATTGTCAAGTACA AAATCTATTCAGAACCTAGTTCCTGAAGAGCGTAAAAGCAGTTTTGCAGCCATAGTTAGTTCAAATATCAAGCTTGTATACTTAAAGAGGAGTTTAGTGG AGGGGCTTTTGAAACAGCCAGAAACTTTTAGTGACAAAGTAATGGGAAGTTTTGTAAGAGTCAAGTCTGACCCGAATGATTATTTACAGAAGAATTCCTA TCTGCTTGTGCAGGTTGTAGGAATAAACAGGTCGTCAAAGAATAACGAAATCAACGGGGAAGTTCTGCTTCAGCTTTGCTACATGCCAAAAGATGTACCT ATCTGCAAAATTTCAGATGATGACTTTACTGAGGAAGAATGTCAAGATCTCTATCAGAGAATGAAAAATGGACTGCTCAAGCAGCCTACCGTACTGGAGC TTGAACAGAAAGCGAGAAGTCTGCATGAAGATATAATAAAGCATTGGATCCCGAGGGAGCTGACACTGTTACAAAATCGCATTGATATGGCCAATGAAAA GGGGTGGAGGAGAGAACTTGCTGAGTACATAGAGCGAAAACTGAAGCTTCAGACTGCATCAGAACAGTCACGTTTATTAAGTGATATTCCAAAAGTAATT CCTGAAATAGTTGATAGCAAACTATCACCGAAGAATTCCCCGAGAAATGATAGGCTTGAGGGAAATGGGTTGCCAGAATTAGCCATGGGAAAGACTTCCA ACTCTGTCGGACGTTATCCCAAGCATAATGCTTTTGCTCGTTGGCCTCATAATACAACAGATGTTGCAGACTCTCCTGTCTCTGCTGAAAAATTGTTTGA GCATCCAGTTTCCCAAGATAAAGGCACTCTTCAATCTACAACAAATGAAATGCAACATGATCCCAAGGCTACACTGCCTGAACAAACAAGATTGAACTCT CAGACCTCAAATAATGGTTTGCATTGTCCTAGGAACACAAGATCTAGATCTGGTATAGATGGCAGAAAACCGAATGCCATGAATACTAAAAAGAAAATAG AGGAAAAACAAAGCATTTCCATTGCTGACCCTATTGAGGCAAGTGCCAATGACAAACAACAGGATGCAAGTATCTCAGATATTCCAATGGGCAAAAAGAT AGTTAACATTTCAACCATAGACGTTATCAAGTTAAGTGATACAGATGAAGAAGATGAAAGTATTGCAGACATTTCAGCAGGAAGGAAGGTAGTGGAGGAT CCTGAGAGTCCTGTTTGGAACTGTTTAAGTCCTTTTGGTGAAAGAAGTGGACCCTATTCATTGTCTGTACTACGACGTTGGATTGCAACTGCTTCATATC ACTTAGAATTCAAGGTTTGGAAGACAGGACAGAGTGAAGCACAAGCAGTACTTCTCACTGATGCTCTTAGCCAAAGTTTCCCTACTATGTAGGTAAATAT GTAAATGAAAGGAAAGCATTGCCTTAAGTACATAATCCGTGTTAATATATGGTTTTTGAATACTTGAGATTGAACCTGGTAGGTGTTTGTGTGGAAGTTG CAAGTACTTTATTTTCATGTGGTTTCCTAATACTGATGGTCTTCAAGAAGGAAAAAGATTAATAATAGAGGTTCTATTTTGTGTGCATTTCCAACATTTT TCCCCTTTACCTTTGTCATGCAATTTTGAGCACAGGGTAGGAACTTAACAAGTCATAGCTAATATGTTGTAGCATTTGCTCTCCTCTCCTATCTTTTATT GCAAAACTTGAAATGACATACATATTCATCAAAACTAGTGAGCAACATTGAAAGTAGAGTGTTGCTTGGTGCAGACAGTAACATAAAACACATTTCAAAC AATGATATATCTGCAAAGGGCATATGATGTAATTGTCTAAATCCC BLAST |
Tissue | pods |
Gene name | LI_gene_144562; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_391927
Blastp | Uncharacterized protein At5g08430 from Arabidopsis with 35.68% of identity |
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Blastx | Uncharacterized protein At5g08430 from Arabidopsis with 47.66% of identity |
Eggnog | SWI SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member(COG5531) |
Kegg | Link to kegg annotations (AT5G08430) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419914.1) |
Pfam | SWIB/MDM2 domain (PF02201.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |