Ll_transcript_392016

• Id Trinity: TRINITY_DN46435_c1_g1_i4
• Name Transcript: Ll_transcript_392016
• Sequence: GATGGATTAGGAAGTGAAGATAAATGGGATGGAAACAAAACAGAAATAGGGACCTTTTGTAATTTTTTACATTCTTGTGATTAAGATTTTCAGAAAAATA AGAATATAAGGATATTTTGGTTTTACTTTCTGTCTCTAGTGATTACATGGTTAGATACATGATTAGTGGTACTATATGGGAGTTTGAATGAAGTGACACG AAACATTTTGGGGCTGTCTGGGTGATAGTTTTTTGAGGGGAAGGGAGGGAAAGGTAAGGCTTTGGAACCCTCTAACAAGTGTATTTCATGGATCCAAAGC CAGGATACTTGATTGGTGATACTATTTGGGAGATGATTTTTGGACAGGACGGGATGGAAAGGTAAGGCTTTGGGCTCCTTGGCTGTGTGATATGTTCTAT TATTTGGTGCCTGTAGTTGGAGAGGAATGCTAAAATTTTCAAGGATAACTACTTGCATTGGCATATTGTATATGATAATGTGAATGTTTAGTTTCATTTT GGTCCTAAGCCAGTGATTACTTCAAAGGAATAATGGAAAGAGTTTGAAGACCTCTACCTAGATGAAGACTTTACTCTTCTGATTTTCTTCTGTTTTTGTT TACTGTATGTTTTTTTTACTCTTTCTCCATTCTAATATAAAAAGCTGAGGCCATATCAGAAAGGCTATATCGTATTTATGTCATTGATTTTAACAAGAGC TCGTTTCTGTTATTATTTTGCCGACTCTTTTGCACTGGTTCATTAATGCTGATTACACCAAGATGTATGCATATGGCCTCTTTCACGTTTTTAAGGTAGT GTGAGCATATGTATGTTGTTAGGCACCTAGGAAACTTAAACAAAAGTTAAGATTTGCTTGGAGTCATGTGCCTCTGATGTCTTCTTTTTGTCAAATTATT ATTGGTTAGTAATCTTTTCTGCATGGTGTGCTTTTTCTTACAAGTTTTTGTCTTGTTCGATGCTTTACAACTTTTTTTGCAACTGATTTCCCTTCCGTGT TACTATTCATTTAGTGGTACACTGGCTATCTATGATGCGGTACAGCTTGTGAGGGCTGACGTTTCCACAATTGCACTCGGCATCGCAGCATCAACGGCTT CCATTATCCTTGGTGGTGGCACCAAAGGCAAGCGCCTTGCTATGCCCAACACTCGAATTATGATTCATCAACCTCTTGGAGGGGCTAGTGGACAAGCTAT AGATGTAGAAATTCAGGCCAAGGAAGTTATGCACAACAAGAATAACATCACCAGCATTATATCCGGTTTCTCCGGTCGCTCATTTGAACAAGTCCAGAAA GATATTGATAGGGATAAATATATGTCTCCAATCGAAGCAGTTGAATATGGAATTATTGATGGTGTAATCGATAGAGATAGCATCATTCCTCTGATGCCAG TACCAGAAAGGGTGAAGTCGACACTGAATTACGAAGAAATAAGTAAAGACCCCATGAAATTCCTAACCCCGGAAATCCCAGATGATGAGATATACTAGCT ATAAATTACTGACAGACATGTACTCATGTTTAAGTTTACCTTAGAGTGCTTGCTAAGTACAACACTTGGGTAAAGCCTGAGGCTACTGTAACAAACAGTG AAATTTAGGATTGTTTTGTATCTGTCTTAACAAATTATTTTATTTTGTGAGTTAAGAATTGTGATACTGTGATTCGAAATTTGTTGGTTATGTTGGTTGT TTCTAAAGCTTTTAATGGCACGATTTCATCTTAACTACAAA
• Tissue: pods
• Gene name: LI_gene_144574;
• Additional information: details;

Expression of Ll_transcript_392016

FPKM

• PAB: 0.2
• PNAB: 0.8
• PS1: 0.5
• PS2: 0.4
• PS3: 0.7
• PW1: 0.3
• PW2: 0.5
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_392016

• Blastp: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic from Arabidopsis with 87.73% of identity
• Blastx: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic from Arabidopsis with 87.73% of identity
• Eggnog: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity)(COG0740)
• Kegg: Link to kegg annotations (AT5G45390)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445220.1)
• Pfam: Clp protease (PF00574.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;