Ll_transcript_389944

• Id Trinity: TRINITY_DN46457_c2_g4_i4
• Name Transcript: Ll_transcript_389944
• Sequence: CGGAATTCGCAAGAGATCTTTTGCCCAAACACTTCAAGCACAACAATTTCTCAAGCTTCGTTAGACAGTTAAACACCTATGGTTTTAGGAAGGTCGATCC AGATCGTTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAACACTTGCTTAGGAGTATAACTAGGAGAAAACCTGCCCATGGTCATAACCAACAA CAGGCTCAGCAATCACATGCACAGAGTTCATCACCAGTAGGGGCATGCGTAGAAGTTGGTAAGTTTGGGCTAGAGGAAGAGGTTGAGAGACTTAAAAGAG ATAAGAATGTGCTCATGCAAGAACTTGTGAGGTTGAGGCAACAGCAACAGACCACTGATAACCAGCTGCAGTCTATGGTTCAGCGCCTTCAGGGGATGGA GCAACGACAGCAACAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGTTTCTTTGCTCAATTTGTACAACAGAAAAATGACAGCAACAGGCAC ATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTTCTGAAACAGAGCATGCTGCTGCTCCCGATGGACAAATTGTTAAATATCAACCTG TGATGAATGAGGCAGCAAAAGCAATGCTAAGGCAGATCATGGCGTGGGATGCTTCTCGTGTAAAATCGTTTAGTAAAAGCCCTGTTAGTTACTTAATTGG TGATGATTCACCGCCACCCAGTACATTGGATAGTAGCAGCTCCTCAAGCCGGGCTTCTGGAGTAACACTTCAAGAGGTCTCTCCAGCTTCTATGCAGTCT TCTCACATTCCTACTGCAAAGGGGATACAAGGGCACATCCCACCTGAAAATCTATCTTCAACGCAAACTGCAGCTTCTGAAAAAGTTACGAAGGTTGGAG TGCCGGAGGCACCTTCTATCTGTGTCCCTCAAGCAGATATGATCATGCCTGATCTTTCTCCCATAACAGGAAATATTCTTGATATTCCTGACGAAAATTT AATGTGCCCTGAGACAGGCAGCGACACATTTATGGATCCTACTTCATTGGGGGCCAGCGAGTCATTTCCCTTAGACTTCGACGGTATTCCACCTGATGCA GACATTGAAGATTTCTTAGGCAATCCTTCTATTTGGGATGATTTTTTGCAAACTCCAGTGTCAGAGGATATTGAGACTGATGTTGCTGAAGTGTCAGAAG GGAATGAGGTGCAGCCAACAGGAAATGGATGGAACAAAACTGAACATTTGGATCAACTTACAGAGCAGATGGGAACTTCTTTCATTTGATGCAAAAAGAG GTTGATTGTGTATGAAATTTAGATTAGTCTTTCACAATGTCTAAGGTAATCCCTGACCCAAACAATACTCAAATGATGTTTGCTGAAGGCCTCTGAAAAA TATACATCAATTTTTCTTTGGAAGATTTACTTCATGAGCATTATTAAAGGGCAGAAACGATGAATGATATTGGTTACCATGTCAAGCTGCTTTTCCTTCT CAATTTCCTTTACACTTTCTTAATGTCTTCTTTGTGAAAGTGAAAATTGAAGAACTGAAGGAGAATTGAAAATTAGCAATGTATTGAGGTACATTAAATC CATCGATTCATTGCAGACTCTTCTCTTCTAAATTTAATTTATGACATAAGTTTAATCCAATAATAATATGTAGTCATGCGTTGAAGAGAGTAGACTTTAG AAATCTTCTATGAGCACGTGGAAAATTTCTT
• Tissue: pods
• Gene name: LI_gene_144777;
• Additional information: details;

Expression of Ll_transcript_389944

FPKM

• PAB: 28.9
• PNAB: 10.4
• PS1: 12.4
• PS2: 6.8
• PS3: 10.3
• PW1: 11.2
• PW2: 9.7
• PW3: 8.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_389944

• Blastp: Heat shock factor protein HSF8 from Lycopersicon with 53.81% of identity
• Blastx: Heat shock factor protein HSF8 from Lycopersicon with 52.3% of identity
• Eggnog: Transcription factor(COG5169)
• Kegg: Link to kegg annotations (101263626)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424141.1)
• Pfam: HSF-type DNA-binding (PF00447.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;