| Id Trinity | TRINITY_DN46467_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_390506 |
| Sequence | GTTTGCAATATAAAATAATAAACGAAACAATTTCATAAGCTGCTTCCGTATTTTCCCGCTATTATTATTGCAGAAGAGTGAGAGAAATGGGTTCGAAAAC CCTAATGGATTTTTGGCAACCATCTTCGAAGCGATTGAAACAAACCCTCACTCCATCAATCTCCAAATCCGATGATCCCACCACCACTTCACTCTCCCTT CACCAAAAAGCACGCATCCAACACAACAAGCTTCTCGCCAAGTCCAAGCGCAATCTCAATCTCTGTCTCCAAAAGGTCTCCGATTCTAAATCCAAAGGGG AGTTTTTAGCACTAGAGGAGTTGTTGGTAGAAGACACGTGGTTGGAAGCTCTCAACGGTGAACTTGAAAAACCCTATGCCATTACTCTTTCCAAATTTGT GGAAACTGAGATTAGTAGCGGCAATTATGTGTACCCTCCTTCTCATTTGATTTTCAATGCTCTTAATTCCACTCCTTTTCATACAGTTAAGGCTGTCATT CTTGGTCAGGACCCTTATCATGGACCTGGTCAAGCGATGGGTCTCTCATTCTCAGTGCCTGAGGGTGTCAAAGTTCCTTCCAGTTTGGTAAATATATTTA AGGAACTTAAGGAAGACCTTGGCTGTTCGATTCCTCCCCATGGAAACCTAGAAAAATGGGCTGTGCAGGGAGTTCTCTTGCTCAATGCTGTTCTCACAGT CAGGAAGCATCAAGCAAACTCTCATGCAAAAAAGGGCTGGGAACAATTTACTGATTTTGTTATAAAGACAATCTCACAGAAGAAGGAAGGAGTTGTGTTT CTGTTGTGGGGAAACTCCGCTCGACAGAAATCGAGGTTGATCGATGCAACAAAGCATCACATTCTTGAAGCTGCGCATCCTTCTGGTTTATCTGCAAATA GAGGCTTCTTTGGCTGCAGGCACTTTTCTCGCACAAACCAACTTCTGGAGCAAAATGGGATCGGTCCCATTGATTGGCAACTATAATTGATATTTTAGAA TTTCAAACCTTTATTCCTTATATCAGAATCTTTTTTGAAGCATGCTACTGCAAGCTTTGGGGTGGTGTTTATATGAGCCCCTTTCCTCTTAATTTAATGA TAATTATGTTGATTATAAAGTCTCCTAAGAAAAAAGATGCTGTTGTCAATAGTTTGGCCCTGCATGTGTAGTCACTTATGAGGATTGTGCAGTACTGAGC AATGATCAATACTATACATTTTGTTCCACCTTTTTGTTATAGGATACTATATGGATTTCGTGCATCAACGATGTGCTGTCTTAATATTAGTATCCCATAT TTTTATTGAAGAGAATCTTACAAGCACGAGATTACTTGCTTGCATGTGAATTTTCAGATCAAAGCATCTAAATGTGGGGTATGAGCACCTTTTATTTATT CCAAAAGATAATGATTGTGTATGTGGAGTTTGTGATGGAGATGGAATTCTGTTAATTAGTTATTTGTTTAGAATCGTTAGAGCACACTCACGCGGTGGTT GTTCTTAACAGGATAAGAATAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_144838; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_390506
| Blastp | Uracil-DNA glycosylase, mitochondrial from Arabidopsis with 63.91% of identity |
|---|---|
| Blastx | Uracil-DNA glycosylase, mitochondrial from Arabidopsis with 63.91% of identity |
| Eggnog | Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity)(COG0692) |
| Kegg | Link to kegg annotations (AT3G18630) |
| CantataDB | Link to cantataDB annotations (CNT0000282) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450955.1) |
| Pfam | Uracil DNA glycosylase superfamily (PF03167.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |