| Id Trinity | TRINITY_DN46496_c1_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_390081 |
| Sequence | TGCGCAGCTGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTCATAACCCTCGATATGGGGTTGCTTGTAGCTGGAACTAAATATCGT GGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTCATCGATGAAGTGCACACTCTAATTGGAGCAG GAGCAGCTGAAGGGGCAATTGATGCGGCTAACATACTAAAACCAGCTCTTGCAAGAGGTGAACTGCAGTGTATTGGAGCCACAACACTGGACGAATACAG GAAGCACATTGAGAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATACTGAAGGGACTT AGAGAGCGCTATGAGATTCACCACAAGCTCCGCTATACCGACGAGGCTCTTGTAGCTGCTGCACAGCTATCTTACCAGTATATCAGTGACCGATTCTTGC CTGACAAAGCTATAGATTTGGTTGATGAAGCTGGTTCACGAGTCCGGCTTCGACATGCACAGTTACCCGAAGAAGCGAGAGAACTTGACAAGGAGGTCAG GCAGATTATCAAGGAGAAAGAAGAAGCTTCTCGCAACCAAGACTTTGAAAAGGTAATGTCTTTCACCTTCACGGGAGGATCTGACTTATATATTTTTAGT GTCAAACCTTATTTTTCAGGAAGACTGTCAACCATCAAGGAAAAAGAAGAACCTTGTTGTCTGAAAAATAATGCTTTTGCTCAAGTACAAATTAAGAGAT TGGCTGATTTTTTATTTTTTATAGTTCTAAGTTGATGCATGTTTCAACTTTTTAGTTTATCGACTTTAAAGATTAGCTGTGTTGAAAAAAGGACAGTGTA CTGATTTGTTTCTTGTTCAAATGTTCCATATTTTAGCCTATAATTTATGGATTCATGATACACTAATTTCTAATAGGCTGGAGAGCTACGAGATAGAGAG ATGGATCTGAAGGCTCAAATCTCAACACTTGTACAGAAGGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGAGATGCAGGTCCTGTCGTGACTGAAG TTGACATACAACATATCGTGTCCTCCTGGACTGGCATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTGAAGATGGAAGATACTTTACA CAAGCGAATCATTGGTCAGGATGAAGCCGTAAAAGCGATTAGTCGGGCTATCCGCCGAGCCCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGC TTCATCTTTTCTGGTCCAACTGGTGTTGGGAAGTCCGAGTTGGCCAAAGCATTAGCTGCATATTACTTTGGTTCGGAAGAAGCCATGATTCGGCTTGACA TGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTCGGCTACACTGAAGGTGGTCAACTGACTGAAGCAGTTCG GCGTCGTCCTTACACTGTTGTACTTTTTGATGAGATTGAGAAAGCCCATCCTGATGTGTTCAACATGATGCTTCAAATCCTGGAAGATGGAAGACTAACA GACAGCAAGGGCAGAACTGTGGATTTCAAGAACACACTTCTAATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGAC TCGATTTGGATTACGATGAGAAGGATAGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_145069; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_390081
| Blastp | Chaperone protein ClpC, chloroplastic from Pisum with 95.45% of identity |
|---|---|
| Blastx | Chaperone protein ClpB from Leptolyngbya with 52.48% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_016180331.1) |
| Pfam | Sigma-54 interaction domain (PF00158.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |