| Id Trinity | TRINITY_DN46512_c1_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_520770 |
| Sequence | AGATTCAGACACAAACCCTAACTAGCTTGAAGAATTTTTAGACCCTCAATCGGCCAAGGCCAACAGCGATTGCGCCAACCCTCAATCTCTCACAACACTT ACGCAACGAAAAATGTCTCTGGTTGCAAACGAAGATTTTCAGCACATTCTGCGTGTGCTCAATACCAATGTTGATGGAAAGCAGAAGATCGTGTTCGCTC TCACCTCAATCAAGGGTATTGGAAGGAGACTCGCCAATATCGCGTGCAAGAAGGCTGATGTTGACATGAACAAGAGAGCTGGTGAGTTGACTGCTGCTGA ATTGGATAACATAATGACTGTGGTTGCGAACCCACGACAATTTAAGATCCCGGACTGGTTCTTGAATAGGAAGAAGGATTATAAGGATGGCAAGTTTTCT CAAGTTGTTTCTAATGCACTTGACATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATTAGGTCAGTAACATTTGGATTGTATATATTTTTATCGA AATAATGGTTACGCATAGCTGAATCACTTTTTACGGAATATACCAGTGTCTGTGATGGCATGATCTTAAATAATGTGACAACATTGCTGTTGATAGTATA TTCATTTTGATACAGATGAGTTATGAGATAATCTTTGTCTAATTGTTTAAATGCATATGATTTATGCTGAAGGATTTTTGATGAGAACTTGCTTATGCAT TGACTGGTTACTTGCTGTTGTAATAGCACTTATGTTTTACTATCATACCTATATGCAGAAACCACCGTGGTTTGAGGCACTACTGGGGCCTCCGTGTCCG TGGGCAGCATACCAAGACTACCGGCCGCAGAGGAAAAACTGTTGGTGTGTCTAAGAAGCGTTAAGTTTTTATATTTTTCTTGGAGATTAGATAATGTTGA AGAGGAAAATTTGAAGTGTATTAGACATATTTTGGATACCTACTTCCTATTGTTTTCAACTCCCTGACAATTTCAATTATGTTTGTTATTTGCTTCAAGT TTTGTTTAGTTGAATGGTCGTATTTTGTGGTGTAGAAACCTTGATTAGTATTCACCTTGTTTCAATGAAATTTATTACTTTCTACAAAAAGTTACAACTG CTGGGGTAAGAAGTGTTCCTACTGTATTGTTTAAGGAAGTGCTGAAAATTGATATTTTGATATATTTAGAAGTGCTGTACTTGTTTTGTTTTAATATCAA ATTTTTGTTTTGTATTCTTTCTAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_145176; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_520770
| Blastp | 40S ribosomal protein S18 from Arabidopsis with 91.6% of identity |
|---|---|
| Blastx | 40S ribosomal protein S18 from Arabidopsis with 91.6% of identity |
| Eggnog | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits(COG0099) |
| Kegg | Link to kegg annotations (AT1G22780) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464902.1) |
| Pfam | Ribosomal protein S13/S18 (PF00416.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |