Id Trinity | TRINITY_DN46530_c1_g1_i12 |
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Name Transcript | Ll_transcript_522522 |
Sequence | TATCCATGTATCTAATAACAGTGAATATCAAATGTGTACTGTGTTCAGAATCAAAGTTCTATAGTTCTGTTCTGTCTATGTTGTTCGGCTTTTAGATTGA TTCAACAAACAACACTGATACAAAATGCAGGCTTCAATTGCATGCTCTTCACTTCCACATAGAAATATAGTTCTTCCACCAACCCTTTCTCCCAAACCTA ATTCTACTTTTACTTTCTTGTCTCTAACCAAATCATCCTCTTACTTCACACCAAGATGCACATTTCAACCTCAACCATTACAAATCTCATCACCTCCATC AAAATCAGTAAGAGTTTCAAGGTCTAAAGTTACTCCACTTCTGTGCGGCATTTCGTCGAACGGGTACAGTGCAAATGAAGGTAGGAGTATTAGGGAGTGG GTTGAGGTGGTCGGTGATGCGATTTCAACTGCATTTCCGTTGTGGGTAACAATTGGGTGTGTTTTGGGGTTGATGAAACCAAATTCTTTCAATTGGGTCA CTCCACAAATGAACATGGTAGGCCTCATTATCGTTATGCTTGGTATGGGTATGACTCTCAGTCTTGAAGATCTTCGTGGGGCTCTTTCTATGCCTAAGGA AGTTCTCTCTGGCTTTTTTCTTCAATATTCGGTTAGTATCTGTGCTTTTTTATTTATTTCTTCTTTGTTTATTTTCTATGTACTATGCTAGTAAGATGTA AGTGAAGAAGTCCTATGTTGGAAACGAATATATAAATTTAAGGTTGTATTGATGTTATGAGATTTTAAGTTGTGATAATGCCCAATTAAAAGAGGGCGAG TTTCGGGTAACTGTAAAATTGTTGCTCAGTGACAATAAGGTAATGAGTTCAAATCATGGAAACAGTCTCTTCATTTGCGGAGGTAAGACTGCATATATCT AACCTTCCCAAAGGACACTGAGTGGGAGCCTTGTGCCTTGAATTGCCCTTTATTAATCCCACTTAAACAGTTCATTAATCGGATATAAGAAATAGTTTAC TTTTATATAATCCAACATCTTTTATTTTAAAGTCAATGATGTTTAATGCATGAAAGCTAGATGATAGGTTGACAATGTAAAAAACCTTAAGGTTGTCTGT CACCACCATTTTTCTCATAAGGTAGACACACATACTAGATGTGGCTAGTTCACTTATCGGTTTTCACTTGCCTTTTTTCTCCGTGTTGGAGATTTTGTTG TTTACCATTTCTTTTAAATAATATTGATGTCTAACAAAAAAGTGGCACCTTTGTATTTATGTGTCAAAATTTATCAACCGAAAATGAAAAAAATAAACAA ACCAAACAACATCTTAGTTTGTTTTGTTGACAATGGAGATTTTAGTTAATCATGGGTGCAACACAGCATGATTTTTCATATTATTGATGGAATTTATATT TATATGGTTATGCAAATACATGGAGATGACTATGAATCTATGATAGCAAGATATGAAAGTGCACCTTCTTTTACCTATATACTATGGGTCATTTATGTTG ATGAGGGGTCGTTTTTTTCTGTGTGGATTTCTAACAATTTTTAGGTGATGCCATTATCTGGATATTTTATAAGCAAACTCTTAAATCTTCCACCACATTA TGCAGCAGGATTAATATTAGTTGGTTGCTGTCCAGGAGGCACAGCTAGTAATATTGTCACTTATCTTGCACGTGGAAATGTCGCACTTTCTGTGATAATG ACAGCTGCAAGTACTGTATCAGCCGTGGTTAGTCCTCTCTTTGTTTTCTTCTTTGATGTGCAATTATGATGATAAAAGTGTGATACCTTTTCATGGAAGG ATTTGCAATCAATTACAAATGGCACCATATGGATTTTTCAAATTCAAATGAAACTGTTGGATGAATTCTGTCTTTAACACGTAGTGGTTGATTACAATAA GTAATTTTAAGAAGTAGAGAAGAAACCATTCTCGGGAATAAGATTTTGTATGAAACATACCATTTTGCCTCTGGATTGATGGTAACAAAAATTCTGTGTT TCATTTGCTTCCCAGATTTGAAATTGGTCAGAAGTCTAGGTTATTTACGGAAATCAACTTATATATTTTCTACATATTTATGTGCTGAGGTATAAATGAT TCTTATTTCTTCCCGTTGTTATTGTACATGTTAGTGTTTGATTATTTTTCCTTTGTTTAGTTGAAAGATAGATATTATCTGGAACATAAAAAGGTTTTAA ATGAAAACCGATGCAATATTAATGGGACTTTTTCATGTGCATTATATCTTAAGTCGTCAACAAACTTCTCAAGCACCATATGGAAGGAAGTATCCTATTA GAATGATCTGCAAATATTCTATACAGTATATACTTTTGTATTGGGCATGTGACATGCCATTCTTTATTTGACATTTTTCCGTTCAAAAATGTAGTTGTTA CGTTAACGTCAAATAGTCCTTTGTTAACTATGCAAATGTCGATTGGTTGAAAACTTAATGTTGCAGGTCCTGACTCCTTTTCTGACAGCCAAACTTGCTG GTAAGTTTGTAGCTGTGGATGCAGCTGGCTTATTGATGTCAACATTACAAGTTGTGCTCTTACCTGTATTGGCCGGTTCAATTCTGAATCAGTATTTCCA ACCTCTTGTTAAACTTGTCTCTCCATTGATGCCACCCATGGCTGTAGCAACTGTCGCAATTTTGTGCGGAAATGCAATTGCCCAGAGTTCTTCTGCCATC CTTATGTCCGGCGGACAAGTAGTTTTAGCATCATGCATTCTTCATGCTTCTGGCTTTTTCTTCGGTTACATACTTGCAAGGTTTCTCGGGATAGATGTGT CATCATCCCGAACAATATCCATCGAGGTTGGAATGCAGAACTCAGTGCTTGGGGTTGTTCTGGCTGCTCAGCACTTTGGAGATCCCCTAACTACAGTACC CTGTGCTGTTTCAAGTGTGATTCACTCAGTCTTTGGTAGTATCCTAGCAGGAATTTGGAGACGCTCTGTGCCTGCTGAGAAGAAGAAGGACTGATATATA TTGCTGGACAAGGTTGATTTATGGAGTGTAATATCTATACACTGTTAGTATAAAGATTTATACACACTCAGTACATCATTCACGATTCATTTGTTTCACT AATAATAATGTAATATTTTTTATAACCACATTATTTCATGGCCCAGAAGCATTCCGGTGCTCTCATCATGCGCGAATTTGCATGCAGGAATGTTGAACTG CCAAGCCATTGTGTTTAAACACTTCCTCTATCACAGTCAATTACAACTTTTGTTTAAATTTTTCTCACATACCTAAACTTTTCTTAATTACACACATACC TGAACTTTTCTTAATTACACACATACCCCTTCTGTTTTAAAAACCTATGGAGTTCTACTAACAAGGGAACTTTATGAAAGGATAAAAAAAAATTCATGCC ATATACGGTTATATGTGTGGCGGGTAGGAATAATTTAATCAAGAATATGGG BLAST |
Tissue | pods |
Gene name | LI_gene_145261; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_522522
Blastp | Probable sodium/metabolite cotransporter BASS1, chloroplastic from Arabidopsis with 76.61% of identity |
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Blastx | Probable sodium/metabolite cotransporter BASS1, chloroplastic from Arabidopsis with 76.61% of identity |
Eggnog | bile acid(COG0385) |
Kegg | Link to kegg annotations (AT1G78560) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456961.1) |
Pfam | Sodium Bile acid symporter family (PF01758.15) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |