Ll_transcript_520367

• Id Trinity: TRINITY_DN46552_c0_g1_i3
• Name Transcript: Ll_transcript_520367
• Sequence: GTTTTTTATAGTACTATTTAATGTCATCACCATGCAACATTTGAACTTGAAGCAATAATGGATAGGCAATGTAGCCTTCAAAACAGAGAAATGCTGCCAA TGCACATGATAATGTTACTTCCTTCATTGCTATTATCAGTATGTTGAGACATAAACATCCAAACTAATATAGGACCAACTCTCCTTGAAGATGATTGGTG TAGCTGAATTGAGGAAGGGATTGTATTTTCTAAGTCAGCTCAGCAAGACTCATGCCAAGCCTCACACTGTAAATGTTTACACTTCATATAATGATGACAA TTTTTGGTATGCTAGATTAGGACACCCTTCACACAAGAAATTGCAACATTTACAAACTATTTTTCCTTTCATTAAGTGTACCAAAACACATGATCCCTGT GAAGTTTGCCATCTTGCTAAACAAAAAAGATTATCTTACTCTCATAGTGTTACTAAATCTGCATTTGCTTTTGATCTCATACATATAGATATATGGGGAC CTATTTCTACTCCTTCTACTTTTGGTCATAAATAATTTCTTACTATTCTTGATGACAAAACCAAATTCACATGGCTTTTTTTCATGAAACAGAAAGGTGA AACCAGTCATCTCATAAAAGGTTGTTACTTATGTTGAAACTCAATTTGACACCAAAATTAAAATGATTAGATGTGATAATGGAAAAGAGTTTCTTATGAA AGATTACTTCTCTCAAAGAGGTATTAGTCATCAAACTTCTTGTGTTGAGACACCTCAACAACATGGTATTGTTGGAAAAAACACCAACACATTCTTGGTG TGACTAGAGCTTTAATGTTTCAATCTAATATACCTCGTTGTTATTGGAATTATGTTGATGCCTATGTTGTTCACTTGATTAATAGACTTCCTACTGTTTT TTGTCTAACAAATCATCTTTTGAGGAATTGCATAATTTGTTGCCTAACTTGACTGATTTGAAAGTTTTTGACAGCTTGTGTTATGGCTCTACTTTAGTTG GACATAGACATAAGCTTGAGCCTAGATCTAGACAAAGTGCCTTCCTAGGATTCAAACAAGGCACTAAAGGCTACATTCTTCTAGACCTGAAAACTAATGA GATATTCTTATCTAGGAATGTAGCTTGTTATGAACACATTTTCCCTCAGTAGTATGAATTCCAACCATCACAAAACCTATACTTCACCTTTTGACCAAAA CCAAGATTGTAGACATGATTTTAACCCTCACAATACCACTTCCCTTGATCACTCTAGAGTTATTGAAACTGATTCTGAGCCTATAAGCATCACTATGACA GAAATTGACACTAGTATTGTGTCTGTTGAGTCTGAGCCTAGAAGCATCACTAGGACAGAAAGTTGATACTAATACTATGCACAATTCTGAGTCATCTAAT GAATGGACTTGTGATAGTCAGATTGATTCCAATAGTAACCCAACTGACTCGAATTGTGACCAAACTAGGCTTCCTCAGGAAACCAATCTTTATGAGTCTG ATCATGTTTCTTTACCCCTTAGGCAATCTCATAGAATAAGAGGTCCTCCTACATACCTAAAATATTACCACTGCACCCTTATGCACAAAAGAATTCCTTC AATTGATCACATTAAGTATCATATCAATAAGAATCTCAACTATGATAAATTGTCTTCAAAGCATAAAGTGTTTTCTCTTGCTATAAGTATGCATGATACT CCAAAGAGCTATGCAGAGGCTATCAAAACTCCTCACTGGCAAGAAGCAATCAACTCAGAATTACAAGCCTTAAGCAGAAACAACACTTGGATCCTGACTG AACTACCATAAGACAAGAAAGCCATAGGATGCAAATGGGTCTTCAAGTTGAAGCACCATGCTGATGGATCAATTGAAAGACACAAAACAAGGCTAGTGGC AAAGGGCTTTAACCAAAGAGAGGGAGTTGACTACATGGACACTTTTAGTCCAGTAGTTAAGATGACAACCATAAGAGTGTTGTTGTGCTTGGCATCTATC TACAATTGGCATTTGCATCAATTGGATATCAACACTGCCTTCCTTCATGGTGATCTCAAAGAATTTGTCTACATGAAAGCACCACAAGGTCTTCAAGTCT CAAATTCCAGAATTGTCTGCAAACTACAAATATCCATCTATGGATTGAAGCAAGCTAGTAGGCAATGGCATGACAAGCTCAACAACATTCTTCTGCAAAT TGGTTATACCAAATCCTTTGCTGGCCATTCTTTATTCGTTAAGAACACTAATAATGGCTGTACAGCCATTCTTGTTTATATTGATGACTTGGTTTTGACA GGTAATGACATTAAGGATATCATGAACACCAAGACAATTCTACATGACAAATTCAGCATAAAGGATCTTGGAGAATTGAAGTTCTTTCTTGGGATGGAAG TTGCAAGATCCAAAAGGGGGATCATTCTATATCAAAGAAAATACACCCTGGATCTCTTGGAGGAAACTGGCTTCCTTGGTGCTAAACCAGCTTCAACCCC TATGGAGTATAACAACAACCTGCATTCTCAATCTGGTTCTCCCTTACCAGATGATTCCTCCTACAGAAAACTAATTGGAAAACTTCTATACTTGACCAGC ACTCGACCTGATATATCCTATGTTGTTGGATCTTTGAGCCAATTCCTTTCTTCACCTACCAATCTCCACTACAAAGCTGCAACAAGGATCCTTCGATACC TCAAACACTCATCAGGTCAAGGCATCTTTTTTCCAGCACAGAACACCACTGCTATTCAAGGCTATTCAGACTCAGATTGGGCTAAATGCATTGACACTAG GAAGTCTATCACTGGATGGTGTTTCTTCTTAGGGAATGCCCTGATCTCATGGAAACGCAAGAAGCAGAATATTGTTTCTAGATCATCCTCCGAAGCAGAG TATAGAGCCCTTGCCATGGCAGTTTGTGAAGCTCAATGGCTGCTTTTTTTTGTTCAGAGATCTTGGCATTCAACACAATAAACCAGTGAGCACCTTTTGT GATAATAATTCTTCCCTTCACATAGCTGTCAATCCTGCCTTTCATGAGCGTACCAAGCACATTGATATTGATTGTCATGTTGTTCGTGAAAGAGTTCTCA GTGGCATTGTTCATCTTCTCCCTATCCAGACTTCTTTGCAACTTGCCGACATATTCACCAAACCTTTATCCCCTTCTCCATTTCATTCGATTGTTTCCAA ACTTGGTATTCTTGACATACATATGTAGTTTGAGG
• Tissue: pods
• Gene name: LI_gene_145449;
• Additional information: details;

Expression of Ll_transcript_520367

FPKM

• PAB: 0.1
• PNAB: 0.4
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 1
• PW2: 0.3
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_520367

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 38.46% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 38.95% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435884.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;