Id Trinity | TRINITY_DN46563_c2_g1_i3 |
---|---|
Name Transcript | Ll_transcript_522285 |
Sequence | AGAACATCGATGCACTGAACCCTAACGAAAAATGCCTCCAAGGAAAAAATCCAACGCTTCTTCTTCCTCTTCCTCTTCCAAGAAACCTTCCAAATTCGGC ATTCAACACTTCTTCGATCGCCACACCGCTTCTCAGCAGAAGATTCAGCATTCCAATGATGCAAACCCCAACACTGCTTCCGATTCCAAATCAGCCACTC ATTTTACGGTTTTACCCTCGCCGAATCTTCCAGAACCTTCTGGATCGTCGAAACCAGGATGTGTTGCTCTCAGAACGGATGCGCTGGATGTTTCGCATAG CAGTGGTGGTAGTAGCAGTAACAATGATGTTAATCGGACGGCTGAGGTTACTCCGCCGGAGAATTTGGTGTTGCCGGGGATTGGTAATGTGGCGACTGAG AGTTTCGCGGCCGAGGAGTCTCCGGAGATGTCTAAGTCTGTGTCACTTAAACGCTTCAAATTCTCACCTGGGATGTTTATAAAGCAAAGTCAGGATGACG GGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGACTCCAAGCAGTTTCGAAACAGATGCCTGCGATAATTAAAGCACTGTCTGACACTTC GAGAATCAACTTGCTGCCACTCCGTAGCTGCTCAGAAAATAAGGATTCTCTTGATAAAGATGGAAAGGTTGAAAAGTTGTTTACTTCACCTCCTCCCAAG GCTTCTTCAAAAGCTCTGGTGTCAATGAGTAAATTAGGGTTGAAAAGGATAAACCCAGATCGTGACGTGGATTCTAATATCAGTGCAGGTGCTGTGAGTA ACTCTGGAGCATCTAGAGGAGAGAGCCCCTTCAGAACTCCACCATCTTTGTCTTATTGCTCTGATAAGCTTGGCAAGGATATTGAGCACAGTGGACCACC TCATCACTCTTATTTGAGACACAAAAAGGAATTTCTTGAGCTGTTAGATCAAGTTGAAGATGCTATTGCTGTTGACGATGCTAATGTCTGTAATCAAAGC ATTTCCTGTTTTAAATCTCAAGGTGGAGTTTCTGATGAGCTTCCTGTCATAGGCAACCGTAAAGTAGAAAAGGCAAAATCACAAATACCTAAAGAGGCCG TTGGTGTGTTCTCCAATTATATTTTTTTGGTTTTAGAGGTGACTGAAAAATGTAGGATTTCTGATTCATCTGCTGCTGGATGCCAATACAAGGTGCTCCG TTTACTAAATGAACTAACTGGGGAAGAGCGGGCTGTAAACTTGTGGGATGAGTGGTCTTGCAGCGTAGTTGCGCCGGGAGACACTGTGAATGTAATCGGT CAATTTGAAGGGGGAAATTGCAATATTGATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTGATGTCTGGAACACGGGTAATTATCTTTTGAA CTTTCTCATTGATATTACTGATTTCCATGGGTGACTAAAATCTTCATCCTAAATTTAGTAAACCAAATACAGTTTAGGTGGTTTGTCTAAATTTTTTTGT GAACTGAAATTTATTTCACTACCTAATTATGCAAATAATACAGTGAAGCAAAATAATATTGTAATGCTGTACATAAGTAATAAGTAATAGTGAAGATACT ACATTTTTAAAAAGGAAAAAATCGGAAGCCATGAATGCAAGTGTTTGAAGCTCTATGAAACCATGTTGAAGTTTGATAAAATTAGAGAAATAGAGAGAGA GAAGAGAAAGGAAACTGAATTTTAAATTGTGTTTATTGATTGTAAAGTTATGTTTACACTTTAATGCAGGATTTATATACCTGCTTCATTTCCTAACTAG ATTGGTAACTGCCTAACTGAAAATATAGCTAATCTAACCATCTCTTGTGGCATAGCAAGAGGCCAACAAGAGTTACGTGAAGTTATTGTACTTCCCTCTA AACTATACAGGTATTGACCTCAGTGCATACATAAAAGTCAAAATTGCTATTTTGGTCCCTCTGACTTAGTTTATTTCCTCAATTTAGTCTCTCAAATGAT TTTCCATCAGTTAGTGTTATAACGTCGTCAGCTTTGGCCTCAAAATGATGTTATTTTGGGTCTTCTTCTTCTCCACCGGATCTGCCATGGTTGATCCACC ATTATTCTCCATCGGCATTAGCGAACTGGAGGAGAAACAGCAACCACTACCACCAGTAGTAACGGCAGCAGCAATGACAGCGTCAAAACCGACGGACATA GAAATGGAGAACAGGACCAAAATGGTGCCGTTTTGATGGGTTTATGGGAAAGTGATGGGAATTGACTTATAGAAGGACTAATGTGAGGGCTTAACCAAAG TTGAGGTTGCTTCCAGTTTCAGTTGTGCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATCAAACGAGTACTCAATTGCAGCTCTAACTGGAACCTTGCT TCACCAAATTTTCCAGGCTGGGCTTATAAAAGTGTCTCCCACGGTCAACTTCTTGGAAGAATATGCAGAAGTGGTATTACAAAGAAACGTTGAAAGTTTG TATGCATGCCAAGAAAATGAAGATAATGTTCGCAAAACCTTGATTAATTCTATCCCGAAATTATTAAGTTGGATCGGACAGTTCAAGAATACAGAGGAAC GAAAAAACCCCAATGTTAATTTCAGATTTGATAATTGCCCAAAGAATGTTATCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCTAAATA TGGTTTGAAGGGGATGATTGATTCTTCTCTTAGAGTGAAAGTTCAATCAGCAAAAGATGAAGGAGAGAAGATCATGCCATTAGAGTTCAAAACTGGAAAG TCATCAAATAGCCAGTCATTAGTAGAACACCGTGCTCAAGTAATATTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACTATTGATTCTGGTCTTC TGTACTATCTGCAATCAGATCAGACACAGGGTATTGTTGCTGAAAGATCTGACTTAGTGGGATTAATAATGCGACGTAATGAGCTAGCCAGTGATATTCT TAAGGCATTGACCTTGCAACAACTGCCACCAATGTTACAGAGTCCTAGCCTTTGCAGAAGTTGTCGCCATCTTGATGTTTGTAGCATTTATCATAAGGCA CATGGTGGAAGCACAGAGGGCAGTGGGCTGGGAAATGTGTTTGATTCTCATACTAATCACCTGACATCTGCTCATTCTAAGTTCCTCTGCCATTGGGATC GACTGATTGACTTAGAAGCTAAAGGGACTGAGCTTTTAAAGAAACAAGTATGGCGATCACATGGCTTGAAGAATCCAATCAATGGTGGCCTTTCCTCTAT TGTTCTTGATTCTTCACATGGAATTCCTCTAGATAAATCTCCAAAAGACAATTATTTCATCTATTGTTTTGTACGACAAGATACTTCACGTCTCTCTGAA GTATCAGATGGTGATCCTTCTAGTGCTTCTCCAAATGATTTAGATCTCACACTTCGAAGTGGAGACCACGTGATACTGAGCAATGGATCTAGCTCTCAAA CTATTGCAAGGGGGGTGATCTCAGATATTAGTCCGTCGCATGTATCTGTTTCCTTTTCTAAATGCTTAAGAATTCCTGGGAGGTCTTCCACTACACATGA TCTCCTTGAACAGGTTTGGAGACTTGATAAGGATGAATATGTCACATCATTTGCAATTATGAGGTTTAATCTTGTACAAATGTTTTTGCAAAATGATCAA AGTGGTCATCTGCGGAGAATGATTGTTGACCTAGAGGCTCCTAGGTTTGACAGTGGATCTATAGTAAGCCAGGATCCAGCGATATCCTATGTTTGGTCAG AGAAGAGTTTGAATGATGATCAACGTAGAGCAGTTCTTAAGATGCTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATC CACAATGGTTCATGCTGTGAAATCCTTGTTGATTAGGGGCACATCCATTTTGCTGACGGCCTATACAAACTCTGCTGTTGATAATTTACTCATCAAATTA AAAGCACAGGGAATTGATTTTGTACGTATTGGAAGAGATGAAGCAGTGCATGAGGACGTCAGAGAACACTGCCTTTCAGCAACTCATGTAAAAAGTGTTG AAGATATCAAAATAAGGTTAGAACAGGTCAAAGTTGTTGCAGTTACTTGTCTGGGCATTTCCAGTCCTTTACTTGCTAACACAAGGTTTGATGTATGTAT TATGGATGAAGCTGGGCAGACCACTCTACCGGTATCCTTGGGCCCTCTAACTTTTGCTTCGGTGTTTGTACTTGTTGGGGATCATTATCAACTACCTCCA CTTGTCCAGAGTACAGAGGCACGAGAGAATGGCATGGGGGTAAGTTTGTTTCGTAGACTCTCAGAGGCACATCCACAAGCAATTTCAGCATTACAGAGTC AGTACCGGATGTGTCAGAGCATTATGGACCTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCGTCCGAGATAGCTAACAGAAAACTTGA ATTTTCTGACTTAAAATGTGGTTTTCCTTGGCTAGAAGATGTTTTAAGCCCAAGCAGGCCAGTGGTATTTATTGATACTGACATGTTGCCTGCTTTAGAG ACAAGAGATCAGAAGATTATAAAAAACCCTCTTGAAGCTCACATAATTGCCGAGGTTTCAAAGGAATTGGTCAACAATGGGATTGCAGTAGAACAAATTG GTGTTATTACCCCCTATAATGCTCAGGCAAACCTCATTCGGCATGCTGCTTGCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGA TAAGGATTGCATTTTAGTATCTTTTGTAAGGTCTAGTGAAGGCCCAACAAGCAGTGCTGCTTCTTTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTC ACTCGTGCAAAGAGAAAGTTGATCATGGTGGGGTCTCCTAGAACTCTATCAAAGGTTCCACTATTGAAGCTTCTCATTAAGAAGGTTGAGAGGCAGTCTG GAATTCTAAGTGTCTCTAAGAAGGACATCTTTCAAACAGGTGAGCTTAAGAGATGTTCCCAATTGAGATGAGTGAATATTCTTTTCCCTTTATTAAGAAA GGTTGTGCAATTTTGTTACTATCACCCATCAAATGCCATGTTTTAATGGTGATTTTGATTTAGAAATGTAAATATAGAATATTTAATAAGATAACCATTC TTTTA BLAST |
Tissue | pods |
Gene name | LI_gene_145520; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_522285
Blastp | DNA replication ATP-dependent helicase/nuclease DNA2 from Xenopus with 36.62% of identity |
---|---|
Blastx | DNA replication ATP-dependent helicase/nuclease DNA2 from Xenopus with 35.54% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (378492) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019452537.1) |
Pfam | Domain of unknown function DUF83 (PF01930.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |