Ll_transcript_521076

• Id Trinity: TRINITY_DN46564_c3_g3_i1
• Name Transcript: Ll_transcript_521076
• Sequence: AGCATTCCTTTCTCAGTATTCATTCTACAAGTCCCTATTGATATGTTTCATCCAAATCTTGTGAGTATCTACCATCAATGTCCTTCCTTTTATCTTTTCC CCATATAAGCAACAAGTTGTGGTTGCTCCTGATGGTTGGGCATGTGTGAAAGAGACTATTAGAAGCCCTAATAAGGAAAGTAGATTAAATGGAGGTTACT CCATTTTCGAGGCAAAGGGAGGCTAAGAAAAACCGTAGGCAAAACAATTAGAAATTATTTAAAGATCAATGATATATCAATGGACATGATTTATAAAACC TTATGACATCATTCAATCCATATAGGCGACCCCACCTAATGGGACTAAAGCTTAGTTGTTGTTGTTGCATATAAGCAGCGAGTTATTTTGAAAATGGGTG CCCTTGCAAGTTCTCTTCTTTCCTCTGCAAGGGAGGGTTGGCAGCTGTATAAAATAAAGTACATAAAAGCATCTAGAGGTAGCTTAGAAAAAATGATTAA AAGTTAAGACGTCTTTCCCACCTTTTCTTTATCCTTCCATGATTACTCTTTGTAGAAGCTAGGAATTGGGTCGAGTGTATTGTGTCTGACCAGATCATAT ATCTCATTCATATTACATGAAATGGATAAAATATGGAAATAAAATAAAAAATCAATCTTTATTATTATTACAACTAGCAAATTATTGATATTCCATATTC ACATGTGATAATGTGTCATTTATAAGACTCCCCCTCAAGCTGGATCATACAAATTGTATGCACCAAAGTTGTACAAATATATTCAGTCCTGTGCCCTTTG AGGGATTCAGTGAGCATGTTAGCAACCTGATCATTGGAATGAAAGGAGTTATTTGATATTTCGCTTGCAAGGACTTTTTCCCAAATGAAATGACAATCTC TTTCTACGTGTTTGGTTCTCTCATGGAAGATAAGATTAGAGGCAATGTGGAGACTGGAGAGTAGCCTGGTTATTACAAATCAACTTCATCTTCTTGACAT CTCCTATCCTGAGTTGAAGAAGTAATTGTCGAAACCATGTTAGTTCATTTGCAGTGATTGCTATAGCATGATATCTAGTCTGTGCACTGGATCAGGCAAC CACTTCTTTCTTATTTCTCCATCAGACTTAATTCCATCCAATAAGAGCACAATAGCCTGATGTGGGTCTTTTATCAAATTGAGATGCTGCCCAATTAACT TCGGAGTAGCTCACGATGTTAGTGTTGCCTTTATCTACGTAAAGTAATCCTTTAGCAGGTGCATTTTTAATGTATATGAGGATACACACTACAACAACCT ATGAGCGTCACAAGGAGCATTCATGAACTGACTCATTACACAAATAAAAAAGTAATATCAGGTCTAGTTACGGTAAGGTAATTAAGTCTACCAACCAAGC GTCATATTGGTTGGGTGGGGTCTTTCAATGGCTACCCTTGACCCCGAGACTAACTTGACACTGGAATCATAGGAGTATCACAAGGTTTGCATTCTAGCAT GCATCTTTTGTCAAAAATGTCTAAAGCATATTTGCATTGATTAAGTATAATGCTAAGAGCAAATTGAGAAACCTCAATAGCTAAGAAATATTCCAGAGGA CCCATGTCCTTTGTCTAAAATTAATGGGAAAGATTTTTGGGATATAGTATGCCAACATGATCATTACATGTGATAATGATTTCATCAGACATAAACTACC AGATAAATGCTAGTGGTAGGTGATGAATGGAGAAAGAATACAAAATGATCAATTGCACATCTCGTCATGTCGAACTGTTTGAGGGTTGAACTAACTCAGC TTAACCATGCATGAGGGAAATGCTTCAAGCTTTAGATGGAACGACAAAGGTTACATGCAGAGTTAGGAGCATCCTCAAAATTGTATCTTGGAGGTTGATC CATGAAGACCCACCATGTAAAAGTGCAGTTTGGTGTCCAACTAACTAAGAGGCCAGTTGTTGATAGCAACAAGGGCAAGGAACAACCTGACAGAGGCGGG AGTTTGACTATTGAAGAAAAAGTGTCATCATAGTCGAGGCCAAAGATTTGTGTGCAACCTTTAGCCGTAAGGCGAGCCTTCAACCAATAGATGATGCCAT CATGTCCAACCTTCAAGATATAAACCCATTTACAACCAACAGTTGTCTTCCTCGGATGTAAAAGAACAAGGTCCCAAGTGCCACTAGAGTGCATGACTTC CACATCATCAATCATAGCTTGCCACCATCCTAAACGGGAGAAGGCTTCACATGTAATCTTCACAATAGACACATAATCCAAAGTCGAAAATATGCATAAT ATGCAGGAGATAATCAATGAGAATATGGGAGCTCTGAGTCAGGCTAAGGAGCTGGATATTTCGATGTAAACAATGATGAGTTGAGGGATTAAATGTGTTG ATACCATGTTCAGGTTGGGCTGCCTGTGGATGGTGAGGTTGCCGATGATAAGTGAGCAGTGGGGGATTGGTCACAGTTGCAGGCACAATCGGTGGTGATA AACATGTCTCTGGAAATAGAGAGCCATTCGGTAGAGAATCAGTGGATGGAAAGAAAGAGCTAGTCTCAAAGAAAGTGATATCAACAGATGTAACGTAGCA CTGCTGAGTAGGAGTTACATTGATAGCCTTTCTGTAGTTGGGAGTGCCAAAGGAATATGCATCTGAGAGATTTGGCAGGCAACTTGTCTTTGTCGGGGAC GAGATTATGAACATAACGTTGCATCTAAAGACTATGGGCATCAAAGAGTATAAATGTTGCTTTGGAACAATAATAAGTGAGGGATGATCGTTGAGCACAG TAGAGAGCATGCAATTGATCAAATAGCATGAAGTATTGATAGCATCACCCCAAAAACATAATGAAACATGATAGTGATGGAGCAGTGTCTGAGCCGTTTT AACTAAGCGACAATTCTTGCACTCTACAACACCATTTTTTTGTAGTGCGTGAGGGCAAGAGGATTGAAGAAAAATGCCCTGAGTTCTAAAAACTTCAAAT GGAGCTGACGAGTATTCACGGGCATTGTGATTGCAGAATTTTAATTGGTATACCAAAATGAGTGCGAATTTCAATGTAGAAGCACTGTAAAACAGACAAA GTGCACTTCTATTTGTCAATAAAAATAACCAAGAACATAGAGTAATCGTTAATGAATGTAACAAAATACTGGTAACCCAAAATTGAAGTGATACAACTTG GACCCCAAATATCAAAATGTAAAAAAGGAGTCACAACTCTCATTTATCCTATTGGGAAAAGTTCACACTAAAGAGAAGACACAATTCGAAACAATTTACA TCAAATGAGTACCCAAAACTACGAATATCCAGTGCATATCGGATACAGGTACCTTACCTTATTTGAAGTACTCATGCAACATAAGTTGCAGACCAGGAAT AGTAAGCCGAAGTTTTTGAAGACTGGGATGACCTAGCTGCTGATGAAGGATAACCAGTGAGTCCAAAGAAATGCACGCTGTAGGTGAGGCTAGTTTATAC AACACTCGGACTCATGACCTGCTCCAATTGTCTATCCAGTCTGCTGACCCTATATCAAAACAAAATTATTAGCAAGCATGGCAAATAGGGCAATGTATGA GTAAGTTTGCTAATATAAATGAGATTAAATGGGCAGAAGGTACATAAGAAAGTGATGGAAGAGGATTAATGTGACCTATGCCCAAAGAGAGTAACAGAAG GTAAGTTGTCCATATAGGATAAAAAGGTGAACACAAATTTATTATTAGACATGATCTGTTGCACCCGAATCAAGAATCTACTGGCCAAGAGAGAAACATT GAGAGACAAAGGCTACATGATTACTTGTATGAGCAACCAAAGCGACTGATGCAGAGGATTGCATGGCAGCTTTCAATTGAATATATTCATTATTCTCAGT AGCGAAAACTTGACCTGGGAAATGAGTTGACTTGTGCTATTGACAAGCCGTATTACGACGTCCAACCTCAGTATTACCAAACTGATTGCAATAAGTACAA CGTGGACGAGAGCATTCGCCACAATGACCACATCCTCTTCCTCCATGCCAAAGCGGTTGAATGATGTGTTGTACAGACTAAGAAAGTCATCAATTGTTCA CCGACAGTATAATAAGGTACTATAGGGCTAGTTAAAACTAATTACGTGCGGAAATCAACTTCAAGAGGAGGATATCATTATTAGTGAAAGGCATAAGGGC CTCAAATTCAGCAACAAAACTACCAGGCTTACCCAGGTGTGTTTCCATGTCCATTTTATATTTCTTCATGGTTATTGAGATTTGAAACAAGGGTGTGGTG ACATTAATGTCATTGGAATATACTTTTTGGCTTAGTTATAAACCTCATGACATGTCTGGAAGGCATAGTACTGAACATGCAGTTTGGCATCAAGAGAGTA CCAGAAAACATCACATAAGGAGGCATCAATTTGTTTCCAACTAGAATTGTCCTTTGTGGGTACATCCTTGAGTTGCTTGAGCAGTTATTCTGCACGTCCA TGCCCTGTGAGGCTGTGAACCAAAGCTGGACAGTGGTTGCCGAAGTGCCATAGTTGGCCGATCCTGGGAGTTTATCACATGGAAGGAGAGTAACAATGGT GAAAAGCTGGAGATGGCTGCTGAAGTGGTATAGTTGGCCAATCCAGGGAGTTTATCACATGGAATGAGAGTAACATTGGTGAAAATAACAGCGGTAGTGG CGGGATTAGCTACTGTTTTTGGGGTGCGGACAGTATGGGCATGTGCGCCGAAGGTTGGAGAGGTCGCCTGAAGAATGACTGGGAGTTATCGGAAAAGGGC TCATGTGCTGGAAACAGCAAGCACATGGAGCTCAAGCGTCAAGAAAGGATAGACGTGTGGAGGCATGTGCAGCAACAGAAGAGGTAGTGGTACCAGGGTT ATGATCGCTGTCTGGTTGGGATCACGGAGGCACACCAGTGAAGGAGGCGTGCGGTGTTGGGCTATATTGGAGTTAGGGTCTACTGTGTTAGCAACACGGC GGAGAAAAAGAGGATCTAATCCTAGTGATACCATGTGGTAACTAGGAATTGGGTTAAGTGTATCGTATGTCTAACCATATAACATATCTCATATTTATAT TACATGAAATGGGTATACAATAATAACTAATCAATTATGATTGTAACATCTATGCACTGTCAGTGTAAATATTTATACACAGACAATACATCATCTACCA TTCATTTATATTACTTTTTTGAAGAGTCAATGATGATTGAAAAGGAATGGTGGATTATGGACTGACAATGTATAAAACTTTTACACTGTTAGTGTATACA TTTTTTTTCTCATCAATTATTACAGCTTACTGCATGTAATGTGCATGTCTAACACTCCTAATGATCATGACTATCACTGCAACAGGTGCATTCCATTGTC TTTCTATTCTCAAATTTAAGGTACTGATTACTGTATTTTCAGTTTTTCATTTGTTTCAGGTGTCTCTGGAACCAGCCTCTTCAATTCTGTTAGTTTGATG
• Tissue: pods
• Gene name: LI_gene_145529;
• Additional information: -

Expression of Ll_transcript_521076

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.3
• PS2: 0.3
• PS3: 0.3
• PW1: 0.2
• PW2: 0.4
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_521076

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 28.79% of identity
• Blastx: Uncharacterized mitochondrial protein AtMg00810 from Arabidopsis with 36.84% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020226197.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;