| Id Trinity | TRINITY_DN46564_c3_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_521077 |
| Sequence | CTTCTTTCCTCTCAAGGGAGGGTTGGCAGCTGTATAAAATAAAGTACATAAAAGCATCTAGAGGTAGCTTAGAAAAAATGATTAAAAGTTAAGACGTCTT TCCCACCTTTTCTTTATCCTTCCATGATTACTCTTTGTAGAAGCTAGGAATTGGGTCGAGTGTATTGTGTCTGACCAGATCATATATCTCATTCATATTA CATGAAATGGATAAAATATGGAAATAAAATAAAAAATCAATCTTTATTATTATTACAACTAGCAAATTATTGATATTCCATATTCACATGTGATAATGTG TCATTTATAAGACTCCCCCTCAAGCTGGATCATACAAATTGTATGCACCAAAGTTGTACAAATATATTCAGTCCTGTGCCCTTTGAGGGATTCAGTGAGC ATGTTAGCAACCTGATCATTGGAATGAAAGGAGTTATTTGATATTTCGCTTGCAAGGACTTTTTCCCAAATGAAATGACAATCTCTTTCTACGTGTTTGG TTCTCTCATGGAAGATAAGATTAGAGGCAATGTGGAGACTGGAGAGTAGCCTGGTTATTACAAATCAACTTCATCTTCTTGACATCTCCTATCCTGAGTT GAAGAAGTAATTGTCGAAACCATGTTAGTTCATTTGCAGTGATTGCTATAGCATGATATCTAGTCTGTGCACTGGATCAGGCAACCACTTCTTTCTTATT TCTCCATCAGACTTAATTCCATCCAATAAGAGCACAATAGCCTGATGTGGGTCTTTTATCAAATTGAGATGCTGCCCAATTAACTTCGGAGTAGCTCACG ATGTTAGTGTTGCCTTTATCTACGTAAAGTAATCCTTTAGCAGGTGCATTTTTAATGTATATGAGGATACACACTACAACAACCTATGAGCGTCACAAGG AGCATTCATGAACTGACTCATTACACAAATAAAAAAGTAATATCAGGTCTAGTTACGGTAAGGTAATTAAGTCTACCAACCAAGCGTCATATTGGTTGGG TGGGGTCTTTCAATGGCTACCCTTGACCCCGAGACTAACTTGACACTGGAATCATAGGAGTATCACAAGGTTTGCATTCTAGCATGCATCTTTTGTCAAA AATGTCTAAAGCATATTTGCATTGATTAAGTATAATGCTAAGAGCAAATTGAGAAACCTCAATAGCTAAGAAATATTCCAGAGGACCCATGTCCTTTGTC TAAAATTAATGGGAAAGATTTTTGGGATATAGTATGCCAACATGATCATTACATGTGATAATGATTTCATCAGACATAAACTACCAGATAAATGCTAGTG GTAGGTGATGAATGGAGAAAGAATACAAAATGATCAATTGCACATCTCGTCATGTCGAACTGTTTGAGGGTTGAACTAACTCAGCTTAACCATGCATGAG GGAAATGCTTCAAGCTTTAGATGGAACGACAAAGGTTACATGCAGAGTTAGGAGCATCCTCAAAATTGTATCTTGGAGGTTGATCCATGAAGACCCACCA TGTAAAAGTGCAGTTTGGTGTCCAACTAACTAAGAGGCCAGTTGTTGATAGCAACAAGGGCAAGGAACAACCTGACAGAGGCGGGAGTTTGACTATTGAA GAAAAAGTGTCATCATAGTCGAGGCCAAAGATTTGTGTGCAACCTTTAGCCGTAAGGCGAGCCTTCAACCAATAGATGATGCCATCATGTCCAACCTTCA AGATATAAACCCATTTACAACCAACAGTTGTCTTCCTCGGATGTAAAAGAACAAGGTCCCAAGTGCCACTAGAGTGCATGACTTCCACATCATCAATCAT AGCTTGCCACCATCCTAAACGGGAGAAGGCTTCACATGTAATCTTCACAATAGACACATAATCCAAAGTCGAAAATATGCATAATATGCAGGAGATAATC AATGAGAATATGGGAGCTCTGAGTCAGGCTAAGGAGCTGGATATTTCGATGTAAACAATGATGAGTTGAGGGATTAAATGTGTTGATACCATGTTCAGGT TGGGCTGCCTGTGGATGGTGAGGTTGCCGATGATAAGTGAGCAGTGGGGGATTGGTCACAGTTGCAGGCACAATCGGTGGTGATAAACATGTCTCTGGAA ATAGAGAGCCATTCGGTAGAGAATCAGTGGATGGAAAGAAAGAGCTAGTCTCAAAGAAAGTGATATCAACAGATGTAACGTAGCACTGCTGAGTAGGAGT TACATTGATAGCCTTTCTGTAGTTGGGAGTGCCAAAGGAATATGCATCTGAGAGATTTGGCAGGCAACTTGTCTTTGTCGGGGACGAGATTATGAATATA ACGTTGCATCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_145529; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_521077
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 28.79% of identity |
|---|---|
| Blastx | Uncharacterized mitochondrial protein AtMg00810 from Arabidopsis with 36.84% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020226197.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |