| Id Trinity | TRINITY_DN46569_c1_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_520974 |
| Sequence | CAACCTCATTCTCAGTTTCTCCTATGTTCTTCTTTCATGGTTGATGATGTTCACCAAGTGGGTCCCACGTTTCATATCAAGTAAAAAATGGAACTTGAAC AATGTGCAATGTTTTTCATCACCCACAAGAGTGAAATCTCCTCTAGAAATGGCTTCAAAGCATGGTGAACTAAGAGTCTTCATTGTTGCTGGAGAAGTTT CTGGAGATTCCATTGCTTCTCGTCTTATGGCTTCTTTGAAACTTCTCTCACCTTTACCTCTTCGTTTTTCTGGTGTTGGAGGGTATGTTTCTAACCAATT ATGAACTCTAATCATATACTTCAATTATCTCTCAAAGTTATATTATTTTGAATTATGGGTAGTATATTATAGATGCAATCAGTTATTTTTTTATTTATCA ACAAATCGTTGGTCTAGTAGTGTAAGTCTATAAGGGTGTAATGCCGACTAGATACTCAGAAAAGCCAAAAGGTTAATGTTTTGATTCCCGGGAGCGACAC TTGTTGGGGAATGAGGATCAGCTTTCCCACATTCTTGTATCCTATTGTGTCTCAATCCAATGAAAAGTTGCTACCTATTTGAAAAAAATAGAAGAAACAC AATAACATTTTTATGTTATTTGGTGAGATATGATTGGCTCGGGACATGGAGACAGAAAATTTTGGAACAGAGGATCTTGGTTCCTTGTTGGGAGGAACAA AGGGATTTGCTCGTTACCCGAAGGTGAGTTATACCCTTGGTAGTACAAAAAAAGTTATTTTTGTGTGTGAATATGTTTAGCGAAAAGTTATTGTAAAATG ATGTTCTGAGAAATTGATTGTTGAGGTTATCGATTTGGTTAGTAATTTTTACCTTATTAGTATCATCTGAATTTCTTGGTGAGTTCAGTATGTGGTACTA TGGTTGAATGAGAGAATCTTGTATCTATCGTTCCATCATCGACCGGTCATGTGTTCGTGATCATTGACTCTGAAGTAAAAACAATATATATGAATGGTGG ATGATAACTCGACATTATAAAAAACTTTAGACTGATGATACATAACAATTAAACTCTTTTTAATAAGCTTAAAACTTTTAGCTTCAATAATTGAGGGAAG AGAAATACTCGGAAGCCATGAAAAACACTTATGAGATGGCTCTGAGGTTTTGCATTGCCCTCCCCCCTACCAAAACAAACTCACAAACAGACCTTTAGGC TCCTTAGCGGTAGATTTTTTTCTTGGCTATGTATCAGTCCACATGATTATGAAACTTGCGGTGTTGAATGTATTGAATGTTGGATGGCTACATTGAAAAA ATGAGCTTCAATTCAATATAGCGTAAATGAGAATGTTGCATTGGTTGAGTGGACATACTAGACAAAATAAAATTAAGAATGGTTGCATTAAACCGTAATT TGAGGTAGCATCTATTATAGAAAAATAGTATAATCTTACTTTAGGTGGTTTGAGTTTATATGGAGAAGACATGTAGGTGGTCCGGGGATGGTAAATGTTT GCAGCCTGACCCTCACAAGTGAAGAGTCTCTTTCCAGGATTTGAACTCATGAGTTCCAGGTCAAAAGGCAAACAACCTTACCAATGAGTCGGGACTAACC TTTGTATGTTTCAATTGATTGTTTGGTCTTTCAAATGCTTTTATCTATTTCAGGGCTAAAATGTCCAGTGAAGGATTGCAATCTTTGTTCCCTATTGAGG ACATCTCAGTAATGGGAATTTGGGAGCTATTACCGCATTTGTATAAATTCAGAGTAAGTAACTAGTACATTGTTTATCTTAACATCATGCTGTATAAGAA GAAACTTCAATTCCAAGAAGCCCGCGCGCCATGGATTGTTGAATCGTATACGCGATGTATGTGTTAGTAAAAGAGAGATAAACAGATTATAAATTTTTAT CGGTTTATAAAATTGTCAGGTAAAATTAAAGGAAACTGTAGAAGCAGCTGCTATATTTGAGCCTCATGTAGTAGTAACAGTTGATTCTAAAGGCTTCTCT TTCCGGTTCTTGAAGCAGCTAAGAGGTATTAACGCATCCACCTCGCTGGAAAAGTGCCACTTGATTATATATGCTCTATGCCGACGGGGAAATACATTTT GCAGCTATATACAGTCAGAAAAAGTTGTATTCAGCAGCACATTTTCACTATGTTGCACCCTCATTCTGGGCATGGAAAGGAGGCGAAGCAAGACTCAGAG GACTAGCATCGTTTGTGGACCATCTATTGTGCATACTTCCGAATGAGGACAAAATCTGTCGGTTGAATGGATTAGCTGCAACCTTTGTTGGGCATCCTGT CCTTGAAGATGTTCTAGAGTTGAATTTGAGAAACAATTCCTCGGTCCAAGAACGGAGGGCTGAAGGAAATGCTGAAGACTTCCGAACTAAACATGCAGTG CCCTCAGGAGCCACTGTTGTCAGCTTGCTTCCCGGAAGCCGAGTACAAGAGGTGACTCGAATGCTTCCCATCTTTGCAAACACGTTCGAACTCCTGAAAG ACACTTTTCCGAATTTGATGACTGTCATTCATGTTGCCCCTAATGAGCATGTGGAGAATTTCATTGCTGGTGCTGTTCATAGATGGCCTGTACCTGTTGT ACTAATTCCAGGAGGAACAACACAACTGAGATATGATGCTTTCAGTGTAAGCACTATTGACTCACTAAATTTACATTTCCGGAGAAATTTTTATGAACTT GTTATGTCGAAAACGTATAATAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_145551; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_520974
| Blastp | Probable lipid-A-disaccharide synthase, mitochondrial from Arabidopsis with 57.07% of identity |
|---|---|
| Blastx | Probable lipid-A-disaccharide synthase, mitochondrial from Arabidopsis with 57.07% of identity |
| Eggnog | Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity)(COG0763) |
| Kegg | Link to kegg annotations (AT2G04560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462594.1) |
| Pfam | Lipid-A-disaccharide synthetase (PF02684.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |