Id Trinity | TRINITY_DN46573_c6_g2_i1 |
---|---|
Name Transcript | Ll_transcript_522081 |
Sequence | ATATTTCTGATTATCTCAATGTGTTGGATCTGGGGTGATCATATTTGGGCTGTTCTAGAACATTCTAAAGCAATATAAATAGAGTGGCCACACATGAAAT AATCACTTCTCAGAATCGCTTATCACTATCATCACAGAAAATGTCATCATCACCAAAGAAGATCACGCTGAAGAGTTCCGATGGCGAAGCTTTCGAGGTT GATGAAGCGGTGGCGGTTGAATCTCAAACCATCAAGCACATGATCGAAGATGATTGCGCTGATAATGGAATCCCTTTGCCCAACGTCACAAGTAAGATCC TTGCTAAGGTTATCGAATACTGTAAGAATCATGTTGAAAAGCCTGCTGATGATGATCTCAAGGCTTGGGATGCTGATTTTGTCAAGGTTGATCAAGCCAC TCTCTTCGATCTTATTCTGGCTGCGAACTACTTGAACATCAAGAACCTTTTGGACCTGACCTGCCAGACTGTTGCGGACATGATCAAGGGGAAGACTCCG GAGGAAATTCGCAAGACCTTCAACATTAAGAACGACTTTACCCCGGAGGAAGAGGAGGAAGTGCGCCGCGAGAATCAGTGGGCTTTTGAATGATCTGTTG AGATTGTGCTTGGTTTGTCTATTTTCTGTTTTAGTTCATATATCATAAATTACAGAGATGTCACATTGTTGACATTTGGGAACTATCAGTAAAACATATT CGCTGCATGAAAACTACAAACCAAATGCTGATTATGGAATCAGTGTGAATGATATCATGCAAGTTTATGATTTAGTTGCTATAGTTTATTTTGATGATTA TGTTTTTGTTGATTATGTGAACTTGGATTTGGCTTCGCTTTTGAGCTTGGGCATTTAGAAGCTGTAAGTAATAGTTAATATATGATGGGGGAATGAATGG TTTGATTCTGGTTATGGTTATGAATATCAACCTTATGTCTCATATTCCATTACTGGAGGATCTAGTACCGAAGAAGAATCCGATTCGATGCCGCTTGTTC ATGTTTTCGCGAACAACATGAATGGGATTTTGATTGGTGTTTGTTTTTGGGATTGCATTTGCTAATCATTCTAGGATTATATGTTTTCTGCTGGGAGTGC ATAGAGGCCGAAGGCCATGTACCTCACATGAAAACATGTCTTTGAGTTTCTTATATATTCTTGTTGGTCACAGCAGTTTTTGAAATTTACTAGAACTTAT AACTTTGTACATTGAGTTAACACTCAAATTGATAACTGAAACTTTTTGCATCACCAAATTTGGTTTTGAGAGAAAGTCCCCAAATAATCTTTAAAACTTG TTTATTTGACAATTTGATACCTGAAATGATTTAATGGGACAAATTGGTTGTTAGAGATTTTGATTTCACCTAATTTAGTTCAAATATCTATGGATAAATT TGTATATGGAAATTTTTTAAATGACCAAATAGTTTTTTCATGGAAAAACTTGGACTTGGTGATGACCCTTTATTTTTTGGAAAATAATATATCCTTCTAC TAAATCCTTATACTAATCCTCCTACCCATAAAAATGTTACATGTGTCATAAAATGATAT BLAST |
Tissue | pods |
Gene name | LI_gene_145585; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_522081
Blastp | SKP1-like protein 1A from Arabidopsis with 82.39% of identity |
---|---|
Blastx | SKP1-like protein 1A from Arabidopsis with 82.58% of identity |
Eggnog | ubiquitin-dependent protein catabolic process(COG5201) |
Kegg | Link to kegg annotations (AT1G75950) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019424140.1) |
Pfam | Skp1 family, tetramerisation domain (PF03931.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |