| Id Trinity | TRINITY_DN46580_c6_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_520503 |
| Sequence | CACCAATCTTCCTATAAACACAAACGCTGCCAGATTTTATTAATCTGAACCCTATGTTAACGCGTTCGCGGGAGAAGAAAGAAAGAAACCTCGGGAAACA GTTACAAAACTCACCCCAATAATTCAGCAACACCCTCACTCCCAGAATCTAAACCCATCAATAGAAATTCCCAATTCTAAACACAGAAACAAAACCAAAA CAAGAAAACCAAAATATCAAAAACATGTCTGATGCATTTTGCAGCGATTGCAAGCGAGAGACGGAGGTAGTTTTCGACCACTCCGCTGGCGACACCGTTT GTTCGGAGTGCGGACTCGTCTTAGAGTCCCACTCCATCGACGAGACCTCTGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACAATGATCCTAACCGTGT CGGTGGGCCCAGCAACCCTCTCTTGACGGATGGTGGTTTGTCAACCGTCATCGCTAAGCCGAATGGTGGCTCCGGTGAGTTCCTATCGTCGTCGCTTGGT CGCTGGCAGAACCGCGGCTCCAACCCCGATCGCGGACTCATCGTTGCATTCAAGACTATTGCTACTATGTCTGATAGGTTGGGACTTGTTGCAACCATCA AGGATCGGGCAAATGAGATATATAAGAGGGTCGAAGATCAAAAGTCTAGTAGGGGAAGGAATCAGGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTG CCGACAAGAAGACAAGCCACGCACTGTAAAGGGTATAGCTTATGTTTCTTTTAACATGTGGGTGCTTCCCAATTTATCTTCCCTTACATATATTAGCTTC CCTGAACTTATGGATTTCAACTAGAAATTTGCTCTGTCGCCAATGGGGCCACGAAGAAGGAAATTGGCCGGGCAAAAGAATACATTGTGAAACAATTGGG TTTGGAGAAGGGTCAGTCTGTGGAGATGGGAACAATACATGCTGGGGACTTCATGAGGCGGTTCTGTTCCAATCTTGGTATGAATAATCAAGCTGTTAAA GCTGCTCAGGAATCTGTGCAGAAATCAGAAGAATTCGATATAAGGTATATTTTGGTTTAGCTCATATTTTCCAAGAGGCTTAAATAGATGTTCGGTGCTC AAGGCTAGTTTGTAATATTGATTAAACTTTCAAACTAATGTAATTGCACATGGTTACAGTTGTTTATTTCCCGTAAATACAGTTTATTGTTGCTTCAAAG TGGAAAGTTGTTGGCAAAAGTTGTGTTAGTCATACAATGAAACAAGGATATTAGCTTCAACTGGGCTTTAGAAACTATGTAGAAAATGTTGGTCGAATAT AGTATTAGACTTCCAAGTTCCCCTTTGAGAAAAAGGTGAAGGGTGAGATTATGGATTAGAACCCTGTAGAGTCTACACAATAGTGTGCTGGATCTGGAGG AGAATTAGAAACTGAGCAGTGTTAGAAGTGGGAACTCCAAGGATTTTGTAGCATTTGTGAGTAATCACTTTGTCATTCTCCATCCTTTTCAAAGCTTTTT TCACATCCAAATTTCAAATTCTACGGTAAAAGGAGGAGTCCAATATCAATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_145643; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_520503
| Blastp | Transcription initiation factor IIB from Soja with 94.89% of identity |
|---|---|
| Blastx | Transcription initiation factor IIB-2 from Arabidopsis with 92.57% of identity |
| Eggnog | Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) (By similarity)(COG1405) |
| Kegg | Link to kegg annotations (548070) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453293.1) |
| Pfam | TFIIB zinc-binding (PF08271.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |