| Id Trinity | TRINITY_DN46580_c6_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_520504 |
| Sequence | CCTACGTTTACCATCTTTGGTTGCCCTCCCGATCCTAAGTAAACTCTCGATTTTAACTACCTTGGGTATCAGACTGAGTGGTGTTTGGAAAGGGGGTGTG TTAGTCAGAGCTATTGGTAGGAGCAGTATCAGTGATGGGAGGATTTGGTTTGTTTTAGGTTACAGAATCATTAGAGGTGTGGGTTATGTGAGATTGTGAG TGGGGGTGAAGGTGCTGCTTCAGGGTTTTAAGATAAGGTAGATGACAAGGCAAATGGAAACCTATATTCATTGAATAGTATAGTACTCTTATTTCTTCTA GATGGTGAGAGGCATTTGGATCCATGTGGGAGGGGGAATACCCAGGAAATACACATTCTTCCGTCCTGAACTGCAGTTTATTTTTGTTATATGGTCCTAG GCCGGAATGTGTACTCTTGATTCTGATTATGTAATAAGGTGTAGCCTACAGCACCATATATAGTTTGACTGGGTAACCTATTGAAGAGTTACACAGCACT TAGGATTTCATGATCCCAAAATTTGAACCTCAAAGAAGCCTGGGCCAAGAGTTAGTCCTCCTCACATGTTAACAATGTGCCTATGCTTTCTTTGAACAAT CCCATTTTGGTGATGGGTGTGTTAGCATGACTCTAATTGATGCCACAGAGGCTAGGAGAGAGCTAAAGGGTCGGAACTCACTCCTCCAGTCTGTTTGCGC ATATTAGACAGTAGTTGTAAATTGGACTTCTGAATAGTTCTTGGAATTGTTTCAAGATAGTTCATGTTTCATACTTTTGTTTGAGGAGATACAACCATGT GTAACGAGTACATGAATCTATTATGACATATAATGTGTAACCATTTGATGATTTCAGGGGCAAGGAGCACAAGGTTTTTTTGTGTGTGTGTATATATATA TATTTATTTTAAGGTTTTAATACACAGTTGGTCCTTATAGTTTCCACTCAATTGGGCTGTGGTCTCTTTTTTGTTTATTGTTTTGGGTACTGTTCCCTAT ATTTTAACTACCGATAAGGACCAATTTTTTAAGGAGTGGAAACTGTAGGGGCCATTCCTTAGACAACATTGTTCATGTTGCATTTTCCAGAAGTACTAGG AGCCAAAGGTATAGTTCACTTTTGATTAGAATTTGTTCTTGTGGATCATGTGCATGAAGCTCTTGAAACTAATTTTCTGAAGCAATTAGTGATGGCTGTA TGCTAACTGATGTCGATAAACGACTAGATCGGGTTTTGGAAGCCATCATATTATGCCAAGCTTCTAAGAACAAACATACCTGTGGTAGGTTATAGTGGAA GTGGACTGCACCCCAGGTGAATTACCTGAAAGGCAGGGTTAGTCTCACTGCTATACTTGTGGAGATGCTTGATCAAATACAAAAGAACGCATCTAAGAAC AATGTTCATAATCCTTGCATTGTGCCAATTTATTTCATTTCTTTCTTTTTTATTCTTCCGATCCCACCCAGTGGGATCAAGGCTTGGTTGTTGGTTTTCT TTTTTATTCTTCAACTTCTGTTTTTATGTATAATTATATTTTTATGCTTCTGTTGCTTTTTGGATTGATTGTAGGATCGGGCAAATGAGATATATAAGAG GGTTGAAGATCAAAAATCTAGTAGGGGAAGAAATCAAGATGCTTTATTGGCTGCATGTCTCTACATTGCTTGTCGGCAAGAAGACAAGCCACGTACTGTA AAGGGTATAGCCTATGTTTCTTTTAAATTGTGGATGCTTCACAATTTATCTTCCCTTTCATAAATTAGCTTCCCTGAACTTATGGATTTCAACTAGAAAT TTGCTCTGTCGCCAATGGGGCCACGAAGAAGGAAATTGGCCGGGCAAAAGAATACATTGTGAAACAATTGGGTTTGGAGAAGGGTCAGTCTGTGGAGATG GGAACAATACATGCTGGGGACTTTATGAGGCGATTCTGTTCTAATCTTGGCATGAATAATCAAGCTGTTAAAGCTGCTCAGGAATCGGTGCAGAAATCAG AAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATCACTCAACTTTCTGATGATAAAAAACCTCTCAAAGATATATC ACTTGCCACAGGAGTTGCAGAAGGAACAATTAGGAACTCCTACAAAGATCTTTACCCCCATGTTTCAAAAATAATACCAAATTGGTATGCTAAGGAGGAA GATTTGAAGAATCTCTGCAGCCCTTAGAGCAAAATATTACCATCCATATTGAACCTATTATATGTCATTGGAGCATATTGTTTTTGATGCACTAGACTGA TTATAAAAACGGGGAAATTACACTAACCTCCCTCGAGGTTTCGGTTAATTACATTTACCTCCGCTCTTGTTTTAAAGAAATTACACTCATCTCTCCTAGA ATGGCGGTGATTGTAATTACACTGCCCCCTTAAGCGAGATGAGTATAGCTTTATGAAACAAGAGGGATAGTAGATATAATTTCGTCAAACTTCAAGGGTA GACGGAATAATCGGAATAATTTCCCAGGTAAAAAATGAACAAGCCTTTATCTTCTGTTTATTTCTATCAATTCTCCTGCAGCCAAGCAACATTTTTTTTC AGCCCATTTTTCCTTCTTTTCACCCTCCCAATCCAAGTACATTTTTGGGAGCGAGGCACCATATAATGTAAGAAATTGCTATACTCTGGTGCAGCATTCA AGAGTTAATGTCATAAAAACATGAACAAAACTTTCATCAATTGAATTCTTTTTTAATACCCATAATGCTTTTTTGGCTTGAATGGAATAGTATTTGTAGG TGCAGCTTCTTTTGTACATTACATTTATATATTAGGAATATAACTAGTGCATTTTATTCTGCTTTAGATTCAATTACTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_145643; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_520504
| Blastp | Transcription initiation factor IIB from Soja with 98.17% of identity |
|---|---|
| Blastx | Transcription initiation factor IIB from Soja with 96.5% of identity |
| Eggnog | Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) (By similarity)(COG1405) |
| Kegg | Link to kegg annotations (548070) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453293.1) |
| Pfam | Transcription factor TFIIB repeat (PF00382.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |