Ll_transcript_520509

• Id Trinity: TRINITY_DN46580_c6_g2_i7
• Name Transcript: Ll_transcript_520509
• Sequence: CACCAATCTTCCTATAAACACAAACGCTGCCAGATTTTATTAATCTGAACCCTATGTTAACGCGTTCGCGGGAGAAGAAAGAAAGAAACCTCGGGAAACA GTTACAAAACTCACCCCAATAATTCAGCAACACCCTCACTCCCAGAATCTAAACCCATCAATAGAAATTCCCAATTCTAAACACAGAAACAAAACCAAAA CAAGAAAACCAAAATATCAAAAACATGTCTGATGCATTTTGCAGCGATTGCAAGCGAGAGACGGAGGTAGTTTTCGACCACTCCGCTGGCGACACCGTTT GTTCGGAGTGCGGACTCGTCTTAGAGTCCCACTCCATCGACGAGACCTCTGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACAATGATCCTAACCGTGT CGGTGGGCCCAGCAACCCTCTCTTGACGGATGGTGGTTTGTCAACCGTCATCGCTAAGCCGAATGGTGGCTCCGGTGAGTTCCTATCGTCGTCGCTTGGT CGCTGGCAGAACCGCGGCTCCAACCCCGATCGCGGACTCATCGTTGCATTCAAGACTATTGCTACTATGTCTGATAGGTTGGGACTTGTTGCAACCATCA AGGATCGGGCAAATGAGATATATAAGAGGGTCGAAGATCAAAAGTCTAGTAGGGGAAGGAATCAGGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTG CCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTCGCCAATGGTGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATCGTGAAA CAACTGGGTTTGGAGAAGGGTCAGTCTGTGGAGATGGGAACAATACATGCTGGGGACTTCATGAGGCGGTTCTGTTCCAATCTTGGTATGAATAATCAAG CTGTTAAAGCTGCTCAGGAATCTGTGCAGAAATCAGAAGAATTCGATATAAGGTATATTTTGGTTTAGCTCATATTTTCCAAGAGGCTTAAATAGATGTT CGGTGCTCAAGGCTAGTTTGTAATATTGATTAAACTTTCAAACTAATGTAATTGCACATGGTTACAGTTGTTTATTTCCCGTAAATACAGTTTATTGTTG CTTCAAAGTGGAAAGTTGTTGGCAAAAGTTGTGTTAGTCATACAATGAAACAAGGATATTAGCTTCAACTGGGCTTTAGAAACTATGTAGAAAATGTTGG TCGAATATAGTATTAGACTTCCAAGTTCCCCTTTGAGAAAAAGGTGAAGGGTGAGATTATGGATTAGAACCCTGTAGAGTCTACACAATAGTGTGCTGGA TCTGGAGGAGAATTAGAAACTGAGCAGTGTTAGAAGTGGGAACTCCAAGGATTTTGTAGCATTTGTGAGTAATCACTTTGTCATTCTCCATCCTTTTCAA AGCTTTTTTCACATCCAAATTTCAAATTCTACGGTAAAAGGAGGAGTCCAATATCAATTGCTGCAGCAGTTATATACATCATCACTCAGCTTTCCGATGA TAAAAAACCTCTCAAAGATATATCACTTGCCACAGGAGTTGCAGAAGGAACAATTAGGAACTCCTACAAGGATCTTTATCCCCATGTTTCAAAAATAATA CCAAATTGGTATGCTAAAGAGGAGGATTTGAAGAACCTTTGCAGCCCTTGAATTGTAGACCAAAATATTACCAAAACTACTCTGAACCTGTTATGTCATT GGAGCATTTTGTTTTGGATGCATTAGACTGTTTGCAAAAAAAAAATTAACAAACCTTTTTTACTCAGTTTTTTCTCATCAATTCCTTGCAGTCAAGTACC ATTCGTTTTCTTTCTCACCCTCCCAGTCTAAGTACATTTTTTGGGAGCGAGTCACCATTTAATGTAAGAATTTGCTCTACCGTGGTGTGGGATCCGAGAG CTAATGTCATAAAAATGGCGAACTCGCCGGTTTCAATCGAGTTCTTCACTGTCGTTAATGATTTTTGAGGTGGATGGAGTAGTTGTAGCTTTGCACATTA CATTTATAAATATACCTAGTGCATTTGACTCTGTTGCAGATTCTGCAATTACTTGATTGTGTAAATTTGTCCTATTCCAGCTTAAAAGTTGGGGTGAGGA TAAATCAGAAGGGATTTCATCAGAGGCCTATTTCTAACCCATTTAGTCTTCATCTATTCTGCAAATAAAATTCACTTTGATTTTGTAAAAAGTTTGTAAA AAAGATGTATTAGCATAAAAGTTTTATTTAA
• Tissue: pods
• Gene name: LI_gene_145643;
• Additional information: details;

Expression of Ll_transcript_520509

FPKM

• PAB: 6.1
• PNAB: 6.5
• PS1: 5.6
• PS2: 3.3
• PS3: 3.9
• PW1: 6.3
• PW2: 5.6
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_520509

• Blastp: Transcription initiation factor IIB-2 from Arabidopsis with 94.65% of identity
• Blastx: Transcription initiation factor IIB-2 from Arabidopsis with 94.65% of identity
• Eggnog: Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) (By similarity)(COG1405)
• Kegg: Link to kegg annotations (AT3G10330)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453293.1)
• Pfam: TFIIB zinc-binding (PF08271.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;