Ll_transcript_521004

• Id Trinity: TRINITY_DN46589_c0_g1_i2
• Name Transcript: Ll_transcript_521004
• Sequence: CTCAATCTTAATTTTAAAAAATAATAAATCAGTAGTTTATTTGAAAAGAGAAAACTCCATAACTGAAACAAGAAATGGATTCTAGGGTTTGGTGAAGCGC AACGCAGAGAGTGAAGAAATGTCGTCACAGTTCTGGAAACCAGGTACCGAAAAGCCTCGTATATTAGAAGACGAAGAAGGTTCCGTTATCTTCTTATCCA ATTCGCTATCATCATCTTCTTATTCTGAGAAACAGAGGCAGCGATTACCTGTGTTCAAGTATCGCAATGCAATTCTATACCTAGTTGAGACTCATGGAAC TACAATAATAGTTGGTGAGACAGGGAGTGGTAAAAGCACTCAAATTCCTCAGTACCTCATAGAAGCAGGTTGGGGCCACGGTGGCCGTCTCATCGGTTGT ACTCAACCGCGGCGTCTCGCGGTTCAGGCCGTTGCGTCTCGGGTTGCGCAAGAGATGGGAGTGCAATTGGGTGAAGAAGTTGGTTACACTATTCGCTTTG AAGATGTTACAAAATCAGTCAGCATCTCTCACTATATACATTTTTTTAATGTTAATTTAGATTCTCCAAATATTATTGATAACAGTGACACTGTTCGCTT TGTTTGGCATGAAATTAGTTTATAACAGTGATATTGTAGCTTATTGCTGTGAATTATCTAAAAAGTGTGAGATTGTAGTTAAAGCTTATGACAGATTGAA GAGTGCTTTGCAAAACTAGCTGATTCAATTAAAGTTTGCAAAAATCAATTGTATTGGGGATAAAAATTGTCACGTGATGAAAGATTATGGGGGCGGGGAT GTGACTGTACTGAAATTTTTAACTGATGGGGTTCTACTAAGGGAGATGATGGATGATCCTCTTTTGACCAAATATAGTGTCATAATGGTAGATGAAGCTC ATGAAAGGTCAATTTCAACTGACATTTTACTTGGACTATTGAAAAAGATTCAACGACGTCGACCAGAGTTGCGTTTGATTATAGCTTCTGCTACTATTGA AGCAAAGTCAATGTCTGACTTCTTCAGAACTAGACACAGACAAAAGTAAGCTGAAAAATGCTAGGTTTCTCTACCAAAGATTACCAGTGGATGAACATCT CTTCCCATAAGCCTTCTACATCTAAAAAAGCGCCGAGAACCTGAAAATGAGGACAGTCGACTGCAATTGGAACCTGCAATCTTATCAGTCGAGGGTAGAA GCTTCAATGTGCAAATTAATTATGCTGAGGAACCTGTCCACGACTATGTTCAAGCTGTTGTTTCAACAGTACTCTCGATTCATGAAAGGGAGTCCACAGG AGATGTTCTAGTCTTTCTTACTGGCCAAGATGATATTGATGCTGCTATTCATTTACTTAATGAAGAAGTTCAAAATAATGGCAAACGATCTTCAGGGTTG GTTCTTTTGCCTCTGTATTCTGGACTTCCTCGTGCTGAACAGGAGTTAGTGTTTTCTCCAACTCCTAGAGGGAAAAGGAAAGTAGTAATTTCTACTAATA TAGCAGAAACATCACTCACACTGGAGGGCGTTGTGTATGTTGTTGACAGTGGATTCTCAAAACAGCGATTCTACAATCCGGTTTCTGATATCGAAAATCT GGTTGTGGCACCAATATCTAGAGCTTCTGCTAGGCAAAGAGCTGGTAGGGCTGGACGAGTTCGACCTGGAAAGTGTTACAGGCTATATACTGAAGAATAT TTTCTAAATGAGATGCCTAATGATGGAATTCCAGAGATACAGAGATCAAATCTTGTCTCATGTGTAATCCAGTTGAAGGCCTTGGGAATTGATAATATAT TGGGCTTTGATTGGCCAGCATCTCCGTCTCCTGAAGCAATGATCCGAGCATTGGAAGTTCTTTACTCACTCGGGGTCTTGGATGATGATGCTAAGCTTAC TTCACCAGTTGGATTTCAAGTTGCAGAGATTCCACTTGACCCAATGATCGCAAAAATGATAATAGCTTCCAACCAATTTGGGTGTTCAGAGGAAATAATC ACAATTGCTGCTGTTCTTTCCATTCAATCTATCTGGATCTCAGGGAGAGGGATACAAAAGGAATCAGATGAAGCTAAATTGAGATTTGCTGCTGCAGAGG GTGACCATGTAACATTCCTTAATGTATATAAGGGGTTTCTTCAGTCTAGTAAATCTTCACAGTGGTGTCACAAGAACTATGTGAACTACCAAGCGATGGT GTGTATCTGTTTTGCAACTTTCAACTGGTTCAGTTTGTCCTTTTTTGCTAATTCTTCTCGAAATGGTGACTTAAATTGCAGAGAAAGGTTATTGAGGTTA GAGAACAACTCAAAAGAATTGCACATAGGATAGGCATAGTCTTAAAATCTTGCGAAAGTGATATGCAGGTTGGTTTTCTGATATTTCAACTGGTCTATAA AAAGCTCTTCCAGAAAATGCATGCAATATTCTCTTCATTTATTCCTTGTTGTCTTCCTGAATAATTGAGTTAGATTAAGCTATACCCAAATGTAATTATT CTTACTTACATATCAGGCAACTTTCTTTGGTTTTTCAACCTACAATATGTTTTCACTTTCAGTTCCTTGATTTCAATTTTAAAGTGATTTAATTTTAACT AGTTATACTTTTGACAGGCTGTTAGAAAAGCAGTCACTTCTGGCTTTTTTGCTAATGCGTGCAGTCTAGAGGTGAGTGACTTCTTGATTAGGACACAAAT GTTATTTATGATAGATCATAATGGCATAGTTCGACCCATGTAGCCGATATTACCTAGTGGGATTAAGACTTGGATGTTGTTGTAAAGTTTTGCCGTATAT TAAATTTTGTGTGAATCAAAATAACTTGACTTGTTGGCTATTTTATTTTTATCCGTGCTTGGTTAAAAGCCATACAGTCATAATGGGATGTACAAGACGT TAAGAGGATCACAAGAAGTTTATATTCACCCATCATCCGTGCTATTCAGGGTAAATCCAAAGTGGGTTATTTACAATTCTCTTGTATCAACTGACCGACA ATACATGCGTAACGTCATAACTGTCGATCCCTCGTGGCTATTGGAGGCTGCTCCTCACTTCTATCAGTTACAGCAGTCTAATCCTCTTTTCTGATTCCCT TACCATTACTAATTGGAATAGATTGTTATCATATATCAACTCAGTTCAAGTGGATCAGAATTATGTACCTTTTGTTGCTTTTGAAGAGTGAGTTTCATCT CAATTATTACAAATTTATGACCAAGTCATTCCATAACACCTGCACCAAACTAACCACATTACTAACCAGTGTCTGTAATTGTCTCCTTCACAATTGGTAT TTCATTTTTAAGGTTATGTATACAATTTTCTGAAGTGAAAATGTTAAGCTTCAGTTATATCCCTATATATGTTTATAGATTGGTATGTGTTCTTGAATGC ATGGAATAATAGGGGTACTTGTGTATGACCCATAAAAGTTGAAAAACCAAATATTATTGCAGGATTTTGGATACTTAGCTTAAATATCCATGTACGATTT GTCACTAAAT
• Tissue: pods
• Gene name: LI_gene_145710;
• Additional information: details;

Expression of Ll_transcript_521004

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0
• PS2: 0.3
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_521004

• Blastp: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 from Arabidopsis with 81.48% of identity
• Blastx: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 from Arabidopsis with 73.36% of identity
• Eggnog: helicase(COG1643)
• Kegg: Link to kegg annotations (AT4G18465)
• CantataDB: Link to cantataDB annotations (CNT0002241)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440202.1)
• Pfam: Helicase associated domain (HA2) (PF04408.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;