Id Trinity | TRINITY_DN46592_c5_g1_i11 |
---|---|
Name Transcript | Ll_transcript_521676 |
Sequence | CCCAGAAGATGTGTTTCTTCCTGTAACCTGCAGTCGTTCATTACATTTACCCTTGCGCTACTCAGATCACACACACCTCCACTCTTCCATTTTCCTCCGC CGCCGTCTCTCCTCGCCGGGGAAGTCTGGAGGATATCCAGGTAGCCACCAGCCAAAGCTGCCTGTGAGCTGCAGCCAGCATTTCCTACTGAAGGAGCAAG TTTTGGATCTTTTGTAGGTTCAATGTTGTCCAATATGGCATTACATGTGTCATTCGTATGTGACACCTAAGATTATAAGGTGCAGTTTTGATCCCTCTTC TTTCTCATTTGTACAAAATTTGCCCCCTATTTCATGTGCACTTTTCATCCTCTAACTTATATGATTGTGCAAGAATGGTCATTCTTTCAACATACCTATT AAAAATATAATAACTTATGACTTCACAACCTCATCTTCTAGAATTAAATGTGAAGTATCTGTTGTCCTCTGCACACTGACGAAGAACCAATGCATGCTCA TAGAGAAGAAAACGAACAACAAAAGAAATTGAAGAATAACATTGTGTTGAGCACTAAACTGTAATTCGTTTTCTTTTCTAATTCCTAACTTATCCAATAA TAATCTATTTTACATACATGGCTTGGTTGATATGATAACATTTTTTTATCCAAACAAATAAAAATGGCTTGTCTTCAAATAAATATTTAATTTTCATTAA TTGATTATTTATATTTTTTTTATTAATTAAAAGATATTTTTATGAATCACTAATTTTATTAAATATAATAACATGGTGACAATTAAGGACCAATACTGTA CTTTATAACATGTGTAATGTCATGATGGACAACATCTTTCGTGTATTTTACATTCAATTCTAAAAGATGAGGTTTGTAATGCATAAGTTATTTGATTGCG AGTATTTATATCAAGTATATTGAAATGAGGACCATTCTTGCACAATCATGAGTCAGATGATGAAATAATGGACATAAAAAATGGCGAACATTGCACAAAA GGAAAATAATGATTGACCAAAACTGCACTTTATAATTTTGGGTGCCATATAAATGAATAATGATTGTAATTTTGCATTAGACAACATCTGCCACATAGGA AAAGCCATTAGGATTTTGGAAGGGAAGTTAGTGGATGGACTATTTTTGCACATTCATGTATGTTAGAGGATGAAAATCACGCATAAAAAATAGGGGGACT AAAATCGCACAATGAAGGAACTTGAGGGACCAAAACAACATTTTAGCATATCTTCAATAATTTTGTTCTTATTTTCATTCATGCCATGCATACCCCTTAA TTTTGTGGTATAATCCAATTCTGGGTACCAGATGTGCTTACTGGCCCACTGTGAAGTACTGTGCTTAATATAAGTAGCATACATGTCAGGGTTTGGTTTA CTGTCGGTATTGATCTATTCTACATCCCTGTTAATCAATAATGCAATTCTTTGGGGGGTCTGAGATCAGTCCATCACCACCTGCGCCAGCAGCTTCTGGA AACAATGGCCATATGATGTATGTGTTCAATAGGAATGGCATATGTTTGCTGTATAGGGAGTGGAATCGCTCGCTCAGGACACTGAATGCCCAGCAAGACC ACAAGTTAATGTTTGGTCTACTTTTCTCACTTAAGTCGTTAACTGCCAAGATGGACCCCACTAGTGCTGAGAAAGGAAACCTTGGCGTGCCTCAGTTACC TGGCCAAGGTTGTTCATTTCACAGTTTTCGCACTAATACATACAAGCTTAGTTTCATGGAAAGTCCTTCTGGGATAAAGGTAAGTTTCAATGATATTCTC GTTCCCTTACATTGGCTTTTGCACATTTATTCATTGATGATTCTAGCTATTTTGGCACTTTGTATTTATCTTATATATATATGTATATATTAATCCCATT TTTAGTCATAAAAATGTTGGATTTATTGATCTAATTTGCGAATGAAAAACTGAAGTGACATGGAACATTAAAAGTAAGAGAAGAAATTTTTTTGAAGGAA TATAAAAGTTTAAACACCATATTTTGATCTTTGGATTTTTTGAGAGATCTAATTTTGTGTGACTTGCAAGTTCCTCTGTGTATGAACCAAATATGAGGAC GATTGGTTTTTGGCTTTACCACTTCAATGTGCCTTGTGAAGTTGCATGTTGACTGTAGAAAAATAACCAACTAACCATGTTTATATGTTCCTTATTGTCT TGGTTTGAGGCCTTGAAATGAAGAAATAAGAGATGCTTTTGTTTTGTATGAAGAGGAGTGCATATCATGCTGCTTAAGTGACAGTGATTTTGGATGCTTC TGGTGTAGGCTGTTTGTGATCCTTCTTGGAAGAGATAAACCCATTGTCCATTGTATTTTCCAACATTTATGCGTCTAAAGTGGTTATATGATTTGAGTAA TCTACCCTTCAACCATTTGGAGAAAAAAAGAAAAACCTGTAAGCTGCAATGATATGAAACAAGAAGGGGGAGGCCAAGGGAAACAGAATGCTCTAAATTA TTTCTGATACACTTATGAAAAGATTCATAAGCCTAAAATGAATAATAAAATCTATAGTGGAAAGTCCAATTTTCCTAATTTTACAACTGTAAGTGACCAA AACTCTAGATTATGTGCTCAAGAAATTTTAATTCAAAATAGGAAAAAAAAGTTGTAATCTGACTAGTAGTAAGATATCTTAAGACCAAAACAACTAAATG TAAGAATTCTTAGTTATAGTTCAGCAAGAAAATTCATTAAGTGTAAAAGTAATTTCCTTCATCCTCCATCAACAAGCTTGCATATCAATTCAGATGTGGG GAAAGACGCACATCTATCATAGCATCTGTCAACTTTTCAACCATGGTTTGAATGGAAGCTATATTCATAGTTCCTAATTTTCACGTCCTTATCCTTTTTT CATTTCATATTTTGTGCCTCACCTGGGCAAATGTTTTACCTTTAGGAAGTGAGTCTGCAAAATTCATATTTCACTAGAAAGATGGTGGGTGTATACTTCC AGTATTTGGTATCATTGTCAAAAACTCAGAATATAAGCTAATGACTAAACTAAGTTCTGTTGTTCTCTCAATTGTTCAGTATGTATTTGGTGGAGGTTGT GATTTGGAATAATTGCATTCAATCTTTTATGATGCTATGATCATTTTGTCTGGCATAGGTATGTTAGCATAAATTGTAGTGGATAACTGAGTTTTGTTGA TTGCATTGAAATTTTCTTTTGGAGAGTTTGTCTTAACATGTTTTGTAAAGATGCATTACGTAGCATAGTAAAACCTAGATCTATTTGGGCAACTAAAGAG ATATGGTTACTGAAAACAGTCACAAATACATCAAATTATTCCTCAAATTAATGTATGTTAAAAATTCAATTTTGCAGTATTCATATACATGTGCTTGCTA TTATGATCATATTTTTTTACTGTGCCACTATTTCTTCGCCTCATGCAGATTATCTTGGTGACTCATCCTAGAACCGGTGACCTACGGGAATCCCTGAAGT ATATCTACAACTTGTATGTTGAATATGTTGTCAAGAATCCACTCTATACGCCTGGATCTCCTATTAGGTCTGAGCTGTTCAATACAACATTGGACCAGTA TGTCAGAGGCATTGCATAGAAGCTGAGTTGCTCCCATTCACCGTTGTTGACGATGAACACGATTCGTTTATCGCCTTTGTTTTCGATAATGGTGCTTGCA TTTGCCCTCAGAGACTCTTGCTAAGCCCTCACTTGATTAAAATGACTTTCCAAGTTACAGCGCTGGATGGTTTGATTATGTTGATACTTGATCAGAAATT CAGTAATCGTTGTCCAAAATTTAAAGGATGGATCTAATTCTATTATGTAGCATAGAGCAACTCATTTTGGCTGAAGTGAATTTTATTGAACCTTTCCTTT TTATGTTGTGTTTATTATATACAGGTATATCTTCAATAATGAAACTTGTGTATTTTAGTTTTTATTAATTTTTTGCAAAATGTAACTTCGTACCATTTTT AAAAGTTTAGGCTAAGACAAGGATCTGATGTCTCATAAAATGTCCAAATCAATGACAATGAAAGAAAACTGATAATATAATG BLAST |
Tissue | pods |
Gene name | LI_gene_145741; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_521676
Blastp | Trafficking protein particle complex subunit 1 from Rattus with 38.33% of identity |
---|---|
Blastx | Trafficking protein particle complex subunit 1 from Rattus with 40.35% of identity |
Eggnog | trafficking protein particle complex(ENOG4111X41) |
Kegg | Link to kegg annotations (287427) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449715.1) |
Pfam | Sybindin-like family (PF04099.11) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |