Ll_transcript_434663

• Id Trinity: TRINITY_DN46626_c5_g2_i4
• Name Transcript: Ll_transcript_434663
• Sequence: CTCCATCACCGGCTCTCAAATTAGGGCTCCGCAAACGCCCAACATAACTATCATCAGTTGCAAAATCACTCCCATCTCAACCTTCACTAATCGATTTTGA TGGCGTGCAATGGCGACGGTTGCCAATCCACTTGTTACAAAGACGAACAACCATGTTCTAAACCAATCGAATCACCAAACCTTATTAGTAAAATTTGCAT TAAGTGCAAACTCAACGACGCCGTTTCTGGCTATGGCGGCGTTGATGATGGACGCTTCTGCGCCGATTGCTTTCGAAGCAACTTGTTTGGGAAGTTCAGG CTCGCTGTTACTTCGAATGCAATGATTACTCCCACTGATAAGGTTCTTGTTGCATTCTCCGGTGGCCCTTCTTCAAGGGTAGCTTTGCAGTTTGTGCATG ACATGCAAGAGAGGGCGCAGAAGAACTTTGATGCGAGTAGAGATAGGTCATTGCCGGTGTTTGGTGTTGGAGTGGTGTTTATTGATGAGAGTGCCATTTT GTCGATTCCTTCTGGTGAAATGGAGGAGGCAGTTGAGGTTATTAGTTCGGTCGTGTCAAGCTTAGCCCCGCCAACGAAAGAGTTGCATATTGTTCCTGTT GAAAATGTTTACTCGTCAGATTCTAGTGATGGAAAGGAGAAGCTTATTAAACTAGTGGGTTCGGTTAGTGATCCAACAGGAAGGGAGGATATGTTGCTTT ATTTGCGGATGTTGGCCCTGCAAAAGGTTGCTTCTGAGTTTGGGTATAACAGACTTATTGTAGGATCATGCGTTTCAAGGATTGCTTCCCATGTGATTTC TGCCACTGTGAAGGGTCAAGGATATTCATTACCTGCAGATATACAATATGTTGATGCTAGATGGGAAATTCCCGTTGTGCTTCCTCTGCGTGATTGTTTT GCCCAAGAGATTAACATGTTTTGCCACCTTGACGGTCTAAAGACTTTTCGGTTTTCTACAGTTCCTTGCTCTAGTATCAATAGCTTGGTCTCATCTTTCG TAGCGTTATTGCAGGAAGAAAATCCATCTCGAGAGAGCACCATTGTAAGAACAGCTGGGAAACTTATTCCCTTCCAATTCAATAGGATTCCCGAGATCGT TGATGGTAAGGTTCCATTGGCAACTCGAAGACGCCAAAAGAGATATAATCTCAAACCCAATGATTCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAAT AGCCCACTTGACAAGTCTGAAATTGTTGATGCAAGCAATGTTGATAGCAGTAGAAGCAGTGACATTTTTTACAGTGCCTGCTGCTCAAGTTGTCATTTTC AGATACTTCCAAGCGATTCCATATCCATGGAGCAATTTTATAAGGATTTACCTCAACCAGTGCTTTCCCGAGCAAAGCAAACCAACAATGGCAATTTGAG TCTGCTCAGGGAACAAATCCAAGATTGCTTGCTTTCAGATTGTGAAGATTAATCTTAAATTTAGTTGCCAACATTTAGACTCTTTGAAGAGGGCACAAAT TCTGGCTTTGGTGAACTTTTAGCCTCTGGCAAAACTAAGAGCATTACAGTTCACCACTGAGATTCACTACTGGCATTCCTTCAGGACATGGTTGTTGTTG ATGATTATCTGGGATAATATTTCAGAGTATATTTGAGTATTAATAATGTGATAGATGACATAATTGAGTTTTTTCATATTCTTGATTCATAAGAATCAGT TTTCAAGCTTTTGATTAATTTAAGTGATTATTTGCATCCATGTACCTAGTGGAAATGACATTGTACTCTAGATTACATATGTTATGGCAAATGTTGGATC ATGAAAGAGGGTTGTCTTAACAAAGTTCCTTTAAGGAATATAAAATAAAGATTCAACATTGGAAGCT
• Tissue: pods
• Gene name: LI_gene_145990;
• Additional information: details;

Expression of Ll_transcript_434663

FPKM

• PAB: 8.2
• PNAB: 9.5
• PS1: 7.4
• PS2: 8.2
• PS3: 8.6
• PW1: 6.9
• PW2: 6.9
• PW3: 6.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_434663

• Blastp: Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.55% of identity
• Blastx: Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.55% of identity
• Eggnog: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation (By similarity)(ENOG410YGU3)
• Kegg: Link to kegg annotations (AT4G35910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444040.1)
• Pfam: Cytoplasmic tRNA 2-thiolation protein 2 (PF10288.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;